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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7901-7950 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9561 | 99.6411 | 98.2804 | 53.4169 | 8330 | 30 | 8287 | 145 | 135 | 93.1034 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.2945 | 99.6172 | 97.0064 | 59.6494 | 8328 | 32 | 8328 | 257 | 256 | 99.6109 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.2945 | 99.6172 | 97.0064 | 59.6494 | 8328 | 32 | 8328 | 257 | 256 | 99.6109 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8574 | 99.1901 | 98.5270 | 64.5573 | 8328 | 68 | 8294 | 124 | 111 | 89.5161 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2550 | 99.5338 | 98.9778 | 48.7637 | 8327 | 39 | 8327 | 86 | 84 | 97.6744 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.4624 | 99.5933 | 99.3319 | 58.5091 | 8326 | 34 | 8326 | 56 | 56 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.4624 | 99.5933 | 99.3319 | 58.5091 | 8326 | 34 | 8326 | 56 | 56 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.4861 | 99.5813 | 99.3911 | 58.2577 | 8325 | 35 | 8325 | 51 | 50 | 98.0392 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.4861 | 99.5813 | 99.3911 | 58.2577 | 8325 | 35 | 8325 | 51 | 50 | 98.0392 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8983 | 99.1544 | 98.6435 | 64.3687 | 8325 | 71 | 8290 | 114 | 105 | 92.1053 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.7864 | 99.1544 | 98.4212 | 63.6442 | 8325 | 71 | 8291 | 133 | 121 | 90.9774 | |
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | het | 69.7650 | 53.9859 | 98.5774 | 56.8653 | 8323 | 7094 | 8315 | 120 | 2 | 1.6667 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 64.7210 | 53.4249 | 82.0746 | 70.9149 | 8322 | 7255 | 8292 | 1811 | 1705 | 94.1469 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.1870 | 98.9876 | 99.3871 | 63.6368 | 8311 | 85 | 8270 | 51 | 43 | 84.3137 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2948 | 99.3780 | 99.2118 | 59.1033 | 8308 | 52 | 8308 | 66 | 66 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.2948 | 99.3780 | 99.2118 | 59.1033 | 8308 | 52 | 8308 | 66 | 66 | 100.0000 | |
| ckim-vqsr | SNP | ti | map_l100_m2_e1 | homalt | 61.9730 | 44.9065 | 99.9639 | 77.0833 | 8305 | 10189 | 8305 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | HG002compoundhet | * | 72.7922 | 67.2062 | 79.3909 | 62.5413 | 8304 | 4052 | 8290 | 2152 | 2132 | 99.0706 | |
| ndellapenna-hhga | INDEL | D1_5 | HG002compoundhet | * | 69.2944 | 67.8709 | 70.7788 | 60.8775 | 8304 | 3931 | 8388 | 3463 | 3380 | 97.6032 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.3524 | 99.2470 | 95.5288 | 54.1878 | 8303 | 63 | 8888 | 416 | 317 | 76.2019 | |
| anovak-vg | SNP | ti | func_cds | het | 98.3229 | 97.6129 | 99.0434 | 32.3272 | 8301 | 203 | 8283 | 80 | 49 | 61.2500 | |
| mlin-fermikit | SNP | tv | map_l125_m2_e1 | * | 62.9750 | 49.8289 | 85.5434 | 62.7659 | 8300 | 8357 | 8296 | 1402 | 1229 | 87.6605 | |
| jli-custom | INDEL | I6_15 | HG002compoundhet | * | 95.9804 | 94.5419 | 97.4633 | 35.3700 | 8297 | 479 | 8299 | 216 | 208 | 96.2963 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 80.5008 | 99.2225 | 67.7227 | 54.9332 | 8295 | 65 | 8615 | 4106 | 4035 | 98.2708 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 80.5008 | 99.2225 | 67.7227 | 54.9332 | 8295 | 65 | 8615 | 4106 | 4035 | 98.2708 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.5930 | 99.2105 | 97.9830 | 63.7025 | 8294 | 66 | 8307 | 171 | 160 | 93.5673 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.5930 | 99.2105 | 97.9830 | 63.7025 | 8294 | 66 | 8307 | 171 | 160 | 93.5673 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002compoundhet | * | 93.9555 | 91.8392 | 96.1717 | 34.6920 | 8294 | 737 | 8290 | 330 | 328 | 99.3939 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1121 | 98.7732 | 95.5059 | 60.7561 | 8293 | 103 | 8288 | 390 | 362 | 92.8205 | |
| mlin-fermikit | SNP | tv | segdup | * | 97.8523 | 97.1988 | 98.5147 | 87.3016 | 8293 | 239 | 8291 | 125 | 50 | 40.0000 | |
| gduggal-bwavard | SNP | tv | segdup | * | 98.0164 | 97.1871 | 98.8601 | 94.3820 | 8292 | 240 | 8239 | 95 | 34 | 35.7895 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.6756 | 98.7256 | 98.6257 | 64.1796 | 8289 | 107 | 8253 | 115 | 108 | 93.9130 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 61.8393 | 51.5519 | 77.2561 | 71.5347 | 8288 | 7789 | 8261 | 2432 | 2302 | 94.6546 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 61.8393 | 51.5519 | 77.2561 | 71.5347 | 8288 | 7789 | 8261 | 2432 | 2302 | 94.6546 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.9711 | 98.6779 | 99.2660 | 59.5335 | 8285 | 111 | 8250 | 61 | 52 | 85.2459 | |
| gduggal-snapvard | SNP | tv | segdup | * | 97.9096 | 97.0933 | 98.7396 | 94.2289 | 8284 | 248 | 8226 | 105 | 33 | 31.4286 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.3938 | 98.9601 | 99.8314 | 43.2370 | 8279 | 87 | 8291 | 14 | 13 | 92.8571 | |
| qzeng-custom | SNP | tv | map_l150_m2_e0 | * | 82.9982 | 72.7081 | 96.6811 | 87.1519 | 8256 | 3099 | 8244 | 283 | 238 | 84.0989 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2720 | 98.6962 | 99.8546 | 54.0539 | 8251 | 109 | 8239 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.2720 | 98.6962 | 99.8546 | 54.0539 | 8251 | 109 | 8239 | 12 | 12 | 100.0000 | |
| asubramanian-gatk | SNP | tv | segdup | * | 97.9981 | 96.6831 | 99.3493 | 93.1884 | 8249 | 283 | 8245 | 54 | 6 | 11.1111 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 93.3528 | 88.7263 | 98.4883 | 45.1727 | 8248 | 1048 | 8535 | 131 | 123 | 93.8931 | |
| qzeng-custom | SNP | ti | map_l125_m2_e1 | homalt | 83.4603 | 71.9759 | 99.3054 | 66.9858 | 8247 | 3211 | 8149 | 57 | 56 | 98.2456 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.9516 | 98.5298 | 89.7799 | 55.6361 | 8243 | 123 | 8240 | 938 | 934 | 99.5736 | |
| gduggal-snapvard | INDEL | I6_15 | * | het | 64.9859 | 82.1571 | 53.7516 | 42.4853 | 8242 | 1790 | 11591 | 9973 | 7974 | 79.9559 | |
| ciseli-custom | SNP | tv | map_l150_m2_e1 | * | 76.7644 | 71.6136 | 82.7136 | 82.0895 | 8237 | 3265 | 8230 | 1720 | 402 | 23.3721 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.7047 | 98.0586 | 97.3534 | 62.7778 | 8233 | 163 | 8203 | 223 | 199 | 89.2377 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.1151 | 98.3983 | 99.8425 | 40.4315 | 8232 | 134 | 8242 | 13 | 12 | 92.3077 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 83.6639 | 97.9752 | 73.0007 | 49.9045 | 8226 | 170 | 8617 | 3187 | 3103 | 97.3643 | |
| qzeng-custom | INDEL | I1_5 | * | hetalt | 84.6275 | 73.4792 | 99.7637 | 61.8865 | 8226 | 2969 | 3378 | 8 | 6 | 75.0000 | |