PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
7751-7800 / 86044 show all
ckim-dragenSNPtvsegdup*
98.3491
99.8476
96.8949
93.2025
85191385192736
2.1978
dgrover-gatkSNPtvsegdup*
99.6606
99.8359
99.4859
91.6354
8518148514446
13.6364
bgallagher-sentieonSNPtvsegdup*
99.4858
99.8125
99.1612
91.3387
8516168512726
8.3333
hfeng-pmm2SNPtvsegdup*
99.6780
99.8125
99.5439
91.3819
8516168512394
10.2564
cchapple-customSNPtvsegdup*
99.5434
99.8008
99.2874
93.0362
8515178499619
14.7541
gduggal-snapplatSNPtiHG002compoundhethet
78.6871
89.5844
70.1534
57.2786
851599086453678282
7.6672
jlack-gatkSNPtvsegdup*
97.7319
99.7890
95.7578
94.5195
85141885103777
1.8568
hfeng-pmm3SNPtvsegdup*
99.7247
99.7890
99.6604
90.6553
8514188510295
17.2414
bgallagher-sentieonINDELD6_15HG002compoundhet*
94.8572
94.2753
95.4464
36.1821
85145178510406403
99.2611
hfeng-pmm1SNPtvsegdup*
99.7305
99.7773
99.6837
90.5181
8513198509276
22.2222
jli-customSNPtvsegdup*
99.5673
99.7773
99.3581
90.4270
8513198513556
10.9091
raldana-dualsentieonSNPtvsegdup*
99.5671
99.7656
99.3693
91.0002
8512208508546
11.1111
rpoplin-dv42SNPtvsegdup*
99.6835
99.6835
99.6834
91.0590
85052785012712
44.4444
qzeng-customSNPtimap_l150_m1_e0het
79.9066
68.7551
95.3758
89.6012
850538658477411348
84.6715
jlack-gatkSNPtifunc_cdshet
99.1254
99.9765
98.2886
33.6861
8502285001481
0.6757
hfeng-pmm2SNPtifunc_cdshet
99.8707
99.9647
99.7769
23.7626
850138499190
0.0000
dgrover-gatkSNPtifunc_cdshet
99.9118
99.9647
99.8590
25.0066
850138499120
0.0000
egarrison-hhgaSNPtifunc_cdshet
99.9236
99.9647
99.8825
23.1721
850138501100
0.0000
ckim-dragenSNPtifunc_cdshet
99.3804
99.9647
98.8029
32.2466
8501385011031
0.9709
bgallagher-sentieonSNPtifunc_cdshet
99.8707
99.9647
99.7769
24.1158
850138499190
0.0000
eyeh-varpipeSNPtifunc_cdshet
98.8564
99.9647
97.7724
26.7528
8501384271921
0.5208
gduggal-bwafbSNPtifunc_cdshet
99.4792
99.9530
99.0099
30.9221
850048500852
2.3529
hfeng-pmm1SNPtifunc_cdshet
99.9060
99.9530
99.8590
22.2902
850048498120
0.0000
hfeng-pmm3SNPtifunc_cdshet
99.9001
99.9530
99.8473
22.7326
850048498130
0.0000
gduggal-snapfbSNPtifunc_cdshet
99.6775
99.9530
99.4036
28.0582
850048500511
1.9608
ndellapenna-hhgaSNPtifunc_cdshet
99.9118
99.9530
99.8708
22.7256
850048500110
0.0000
jli-customSNPtifunc_cdshet
99.8825
99.9530
99.8121
22.8972
850048500160
0.0000
jmaeng-gatkINDELD6_15HG002compoundhet*
95.0402
94.1203
95.9783
36.0728
85005318496356353
99.1573
rpoplin-dv42SNPtifunc_cdshet
99.9236
99.9530
99.8942
23.9564
85004849892
22.2222
raldana-dualsentieonSNPtifunc_cdshet
99.8414
99.9412
99.7418
23.3144
849958497220
0.0000
ckim-gatkSNPtifunc_cdshet
99.5548
99.9412
99.1713
33.6071
849958497711
1.4085
jmaeng-gatkSNPtifunc_cdshet
99.2988
99.9412
98.6647
33.9419
8499584971151
0.8696
ltrigg-rtg2SNPtvsegdup*
98.9872
99.6132
98.3690
88.4663
849933850414121
14.8936
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
88.6540
89.8499
87.4895
45.7726
849896093431336702
52.5449
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
79.1180
67.8700
94.8349
76.6136
849840238501463140
30.2376
egarrison-hhgaSNPtvsegdup*
99.5315
99.6015
99.4616
90.4428
84983484984615
32.6087
cchapple-customSNPtifunc_cdshet
99.7946
99.9177
99.6718
27.6397
849778504281
3.5714
ckim-dragenINDELD6_15HG002compoundhet*
94.6830
94.0760
95.2979
36.3455
84965358492419416
99.2840
ghariani-varprowlSNPtifunc_cdshet
99.5080
99.8942
99.1249
31.7349
849598495752
2.6667
ltrigg-rtg1SNPtvsegdup*
98.9694
99.5663
98.3796
89.2053
849537850014020
14.2857
ndellapenna-hhgaSNPtvsegdup*
99.4730
99.5546
99.3915
90.2986
84943884945218
34.6154
qzeng-customSNPtifunc_cdshet
99.7296
99.8589
99.6007
30.7386
8492128481341
2.9412
ltrigg-rtg1SNPtifunc_cdshet
99.6011
99.8471
99.3563
21.6630
8491138490551
1.8182
ltrigg-rtg2SNPtifunc_cdshet
99.6069
99.8354
99.3795
21.1847
8490148489531
1.8868
ghariani-varprowlSNPtvsegdup*
97.0800
99.5077
94.7680
93.4258
849042849546932
6.8230
ckim-vqsrSNPtifunc_cdshet
99.7473
99.8119
99.6828
33.7510
8488168486270
0.0000
gduggal-snapfbSNPtvsegdup*
98.5144
99.4491
97.5971
92.7173
848547848920912
5.7416
cchapple-customINDELD6_15HG002compoundhet*
95.2970
93.9320
96.7022
31.4437
84835489882337326
96.7359
ckim-isaacSNP*map_l125_m1_e0homalt
66.8137
50.1804
99.9411
61.4585
84838422848355
100.0000
ciseli-customSNP*map_l150_m0_e0*
75.3031
70.4787
80.8364
85.2202
8480355284662007507
25.2616