PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
7701-7750 / 86044 show all
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1607
93.4776
99.0024
33.2299
868560687338882
93.1818
gduggal-snapfbINDELI1_5*hetalt
80.2098
77.5793
83.0249
77.6167
868525104128844445
52.7251
ndellapenna-hhgaSNPtvHG002compoundhet*
98.0516
97.2879
98.8274
47.0684
8681242868110393
90.2913
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
77.1546
63.0485
99.3919
33.0569
8678508688265453
98.1481
gduggal-snapfbINDELI1_5HG002compoundhethetalt
85.0180
77.5969
94.0087
72.7861
867325044111262204
77.8626
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.5598
93.3484
100.0000
31.4834
8673618871600
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.5598
93.3484
100.0000
31.4834
8673618871600
ghariani-varprowlINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
65.9654
55.6526
80.9698
74.3202
86696908863320291680
82.7994
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
66.2291
94.8867
50.8665
79.7967
866646788068506164
1.9281
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
66.2291
94.8867
50.8665
79.7967
866646788068506164
1.9281
ltrigg-rtg2INDELD6_15HG002compoundhet*
97.5434
95.9362
99.2054
30.5780
866436786156963
91.3043
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
75.9388
61.7232
98.6618
39.1505
866153718184111101
90.9910
jli-customINDELD6_15HG002compoundhet*
96.8618
95.8809
97.8630
33.8766
86593728655189186
98.4127
mlin-fermikitSNPtvmap_l100_m2_e0het
70.4610
54.8457
98.5073
60.6122
8653712486451312
1.5267
ghariani-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
45.8395
42.0033
50.4468
47.0151
865111945863784848329
98.1730
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
79.2090
80.0667
78.3696
91.0972
8648215386812396141
5.8848
gduggal-bwafbINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
93.3883
91.3830
95.4836
39.3587
86438159408445428
96.1798
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
76.0027
83.0403
70.0649
36.4124
864217651112747543440
72.3601
ckim-gatkSNP*map_l125_m0_e0het
79.9330
68.2249
96.4920
90.8886
86404024863731430
9.5541
jmaeng-gatkSNP*map_l125_m0_e0het
79.8036
68.1775
96.2100
91.1308
86344030863134027
7.9412
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.9007
77.8470
90.9754
41.3740
862724559355928916
98.7069
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
62.2772
53.6141
74.2796
69.6025
86197457837829012024
69.7690
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
62.2772
53.6141
74.2796
69.6025
86197457837829012024
69.7690
ckim-isaacINDELI6_15*het
88.7567
85.9065
91.8024
48.2080
861914148623770554
71.9481
asubramanian-gatkSNPtvHG002compoundhet*
98.0032
96.5370
99.5145
49.4980
861430986094211
26.1905
dgrover-gatkINDELD6_15HG002compoundhet*
95.8086
95.3161
96.3062
36.3267
86084238604330327
99.0909
ckim-isaacSNP*lowcmp_SimpleRepeat_diTR_11to50*
92.7405
88.7846
97.0653
58.2458
860510878798266144
54.1353
astatham-gatkINDELD6_15HG002compoundhet*
95.7191
95.2165
96.2270
36.2319
85994328595337334
99.1098
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_diTR_11to50het
61.1186
54.5495
69.4865
69.7213
859771631009544331247
28.1299
jlack-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
95.8359
92.4591
99.4688
63.5748
859570186134642
91.3043
gduggal-bwaplatSNP*map_l125_m2_e0homalt
66.1790
49.4619
99.9651
80.4937
85948781858733
100.0000
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
86.1524
77.3435
97.2257
44.5184
858925168586245240
97.9592
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
86.3046
77.4770
97.4025
63.5175
858624968587229186
81.2227
mlin-fermikitSNP*map_l100_m0_e0het
57.3538
40.4669
98.4278
57.0061
85811262485771374
2.9197
qzeng-customINDELD1_5*hetalt
89.9947
83.6798
97.3404
85.7251
8573167218355
100.0000
jmaeng-gatkSNPtvmap_l125_m2_e1het
87.8827
81.2376
95.7119
88.2796
85731980857138413
3.3854
mlin-fermikitSNPtimap_l125_m2_e0het
62.0977
45.3857
98.2903
64.2784
85671030985661497
4.6980
ckim-gatkINDELD6_15HG002compoundhet*
95.5310
94.8178
96.2551
36.1757
85634688559333330
99.0991
qzeng-customSNP*map_l125_m0_e0het
78.6100
67.5932
93.9173
91.2651
856041048492550460
83.6364
ckim-vqsrINDELD6_15HG002compoundhet*
95.5291
94.7736
96.2967
36.1965
85594728555329326
99.0881
gduggal-bwaplatSNPtiHG002compoundhethet
83.6361
90.0158
78.1008
46.8217
855694986772433181
7.4394
ckim-gatkSNPtvmap_l125_m2_e1het
87.8849
81.0480
95.9816
88.0637
85532000855135815
4.1899
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
76.2491
62.1404
98.6463
36.1300
85535211787010894
87.0370
qzeng-customINDELD1_5HG002compoundhethetalt
91.1048
83.6629
100.0000
61.9355
8547166917700
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
62.7686
68.2214
58.1230
35.1882
8542397916951122139571
78.3673
mlin-fermikitINDELD1_5HG002compoundhet*
74.1830
69.7262
79.2484
64.3487
85313704852022312171
97.3106
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
71.8331
93.3976
58.3587
78.4954
85306038633616087
1.4123
ciseli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
71.8331
93.3976
58.3587
78.4954
85306038633616087
1.4123
ckim-vqsrSNPtvmap_l125_m1_e0*
69.0966
53.2030
98.5313
88.9389
8521749585201271
0.7874
eyeh-varpipeSNPtvsegdup*
97.0429
99.8476
94.3914
91.6933
851913839849911
2.2044