PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
701-750 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | * | map_siren | * | 98.4685 | 98.6644 | 98.2733 | 60.5270 | 144275 | 1953 | 144278 | 2535 | 801 | 31.5976 | |
| ciseli-custom | SNP | tv | HG002complexvar | het | 94.7007 | 95.5637 | 93.8531 | 24.0959 | 144047 | 6687 | 143323 | 9387 | 273 | 2.9083 | |
| cchapple-custom | SNP | * | map_siren | * | 98.2653 | 98.4743 | 98.0572 | 58.9696 | 143997 | 2231 | 143999 | 2853 | 550 | 19.2780 | |
| gduggal-bwafb | INDEL | D1_5 | * | * | 98.5809 | 98.0538 | 99.1138 | 59.5290 | 143889 | 2856 | 144727 | 1294 | 903 | 69.7836 | |
| jpowers-varprowl | SNP | * | map_siren | * | 98.5825 | 98.3751 | 98.7907 | 60.8110 | 143852 | 2376 | 143855 | 1761 | 441 | 25.0426 | |
| mlin-fermikit | INDEL | I1_5 | * | * | 96.5813 | 95.3758 | 97.8177 | 52.8217 | 143697 | 6967 | 143523 | 3202 | 3142 | 98.1262 | |
| qzeng-custom | INDEL | D1_5 | * | * | 98.2982 | 97.8575 | 98.7428 | 57.2067 | 143601 | 3144 | 144677 | 1842 | 1294 | 70.2497 | |
| ckim-isaac | INDEL | I1_5 | * | * | 96.6542 | 94.9085 | 98.4652 | 49.5628 | 142993 | 7671 | 142942 | 2228 | 1638 | 73.5189 | |
| egarrison-hhga | INDEL | D1_5 | * | * | 96.9873 | 96.8033 | 97.1720 | 57.4559 | 142054 | 4691 | 142118 | 4136 | 3666 | 88.6364 | |
| ndellapenna-hhga | INDEL | D1_5 | * | * | 96.9939 | 96.6915 | 97.2981 | 56.7713 | 141890 | 4855 | 141954 | 3942 | 3509 | 89.0157 | |
| gduggal-bwavard | SNP | * | map_siren | * | 97.0294 | 96.9773 | 97.0815 | 65.0881 | 141808 | 4420 | 139841 | 4204 | 408 | 9.7050 | |
| gduggal-snapfb | INDEL | D1_5 | * | * | 96.2520 | 96.4735 | 96.0315 | 60.0578 | 141570 | 5175 | 142868 | 5904 | 2222 | 37.6355 | |
| ckim-isaac | INDEL | D1_5 | * | * | 97.5429 | 96.3222 | 98.7949 | 47.4402 | 141348 | 5397 | 141168 | 1722 | 1190 | 69.1057 | |
| gduggal-snapvard | SNP | * | map_siren | * | 96.2272 | 96.4179 | 96.0373 | 65.1379 | 140990 | 5238 | 139038 | 5737 | 591 | 10.3016 | |
| eyeh-varpipe | INDEL | I1_5 | * | * | 94.9923 | 93.5665 | 96.4622 | 53.4954 | 140971 | 9693 | 141103 | 5175 | 4944 | 95.5362 | |
| mlin-fermikit | INDEL | D1_5 | * | * | 96.7247 | 95.7954 | 97.6723 | 56.1904 | 140575 | 6170 | 140399 | 3346 | 3212 | 95.9952 | |
| gduggal-snapplat | SNP | * | map_siren | * | 96.8913 | 95.7977 | 98.0103 | 67.7918 | 140083 | 6145 | 140139 | 2845 | 1340 | 47.1002 | |
| eyeh-varpipe | INDEL | D1_5 | * | * | 95.6258 | 94.7617 | 96.5059 | 56.5047 | 139058 | 7687 | 139038 | 5034 | 4747 | 94.2988 | |
| ckim-isaac | SNP | tv | HG002complexvar | het | 95.8287 | 92.0463 | 99.9352 | 18.9218 | 138745 | 11989 | 138887 | 90 | 17 | 18.8889 | |
| gduggal-snapplat | INDEL | * | * | het | 75.6756 | 70.3729 | 81.8427 | 68.5533 | 136617 | 57516 | 150007 | 33280 | 2606 | 7.8305 | |
| gduggal-bwaplat | INDEL | I1_5 | * | * | 93.7478 | 88.8514 | 99.2155 | 64.5183 | 133867 | 16797 | 133798 | 1058 | 675 | 63.7996 | |
| gduggal-snapvard | INDEL | D1_5 | * | * | 87.8248 | 91.1601 | 84.7249 | 55.7284 | 133771 | 12972 | 160064 | 28858 | 22853 | 79.1912 | |
| ghariani-varprowl | INDEL | I1_5 | * | * | 89.9389 | 88.6296 | 91.2876 | 58.9415 | 133532 | 17131 | 133404 | 12732 | 11050 | 86.7892 | |
| gduggal-snapvard | INDEL | I1_5 | * | * | 88.2138 | 87.9937 | 88.4349 | 55.6066 | 132574 | 18089 | 133297 | 17432 | 13523 | 77.5757 | |
| anovak-vg | SNP | * | map_siren | * | 88.0035 | 90.6441 | 85.5124 | 59.7358 | 132547 | 13681 | 130863 | 22171 | 5290 | 23.8600 | |
| gduggal-bwavard | INDEL | I1_5 | * | * | 89.8158 | 87.7423 | 91.9898 | 54.5219 | 132196 | 18468 | 131206 | 11425 | 10755 | 94.1357 | |
| ckim-gatk | SNP | * | map_siren | * | 94.1020 | 89.7981 | 98.8391 | 66.9681 | 131310 | 14918 | 131287 | 1542 | 125 | 8.1064 | |
| jmaeng-gatk | SNP | * | map_siren | * | 94.0415 | 89.7742 | 98.7347 | 67.2383 | 131275 | 14953 | 131252 | 1682 | 121 | 7.1938 | |
| gduggal-bwavard | INDEL | D1_5 | * | * | 90.6910 | 89.3918 | 92.0286 | 58.1851 | 131178 | 15567 | 129649 | 11230 | 9891 | 88.0766 | |
| anovak-vg | INDEL | D1_5 | * | * | 90.2130 | 89.2296 | 91.2183 | 56.6455 | 130940 | 15805 | 132532 | 12759 | 9010 | 70.6168 | |
| ghariani-varprowl | INDEL | D1_5 | * | * | 89.8931 | 89.1478 | 90.6510 | 61.1738 | 130819 | 15925 | 130678 | 13477 | 11237 | 83.3791 | |
| jpowers-varprowl | INDEL | I1_5 | * | * | 89.2914 | 86.7586 | 91.9765 | 55.5394 | 130714 | 19950 | 130591 | 11392 | 11025 | 96.7784 | |
| gduggal-bwaplat | INDEL | D1_5 | * | * | 93.7723 | 88.9284 | 99.1742 | 65.9734 | 130498 | 16247 | 130430 | 1086 | 611 | 56.2615 | |
| ciseli-custom | INDEL | D1_5 | * | * | 87.6336 | 88.4662 | 86.8164 | 62.0849 | 129818 | 16925 | 129564 | 19675 | 10919 | 55.4968 | |
| astatham-gatk | SNP | * | map_siren | * | 93.7139 | 88.2540 | 99.8939 | 58.6796 | 129052 | 17176 | 129029 | 137 | 67 | 48.9051 | |
| jpowers-varprowl | INDEL | D1_5 | * | * | 89.7951 | 87.9294 | 91.7417 | 58.6226 | 129032 | 17713 | 128909 | 11604 | 11168 | 96.2427 | |
| ciseli-custom | INDEL | I1_5 | * | * | 87.1708 | 85.4583 | 88.9534 | 56.1825 | 128754 | 21909 | 128479 | 15955 | 13768 | 86.2927 | |
| ciseli-custom | SNP | * | map_siren | * | 89.7321 | 87.9989 | 91.5349 | 59.0239 | 128679 | 17549 | 128115 | 11848 | 2967 | 25.0422 | |
| qzeng-custom | SNP | * | map_siren | * | 92.3867 | 86.6004 | 99.0016 | 63.6130 | 126634 | 19594 | 125047 | 1261 | 903 | 71.6098 | |
| bgallagher-sentieon | INDEL | * | * | homalt | 99.4457 | 99.8937 | 99.0017 | 58.7526 | 125039 | 133 | 125049 | 1261 | 1237 | 98.0967 | |
| dgrover-gatk | INDEL | * | * | homalt | 99.5819 | 99.8906 | 99.2752 | 59.0938 | 125035 | 137 | 125045 | 913 | 890 | 97.4808 | |
| astatham-gatk | INDEL | * | * | homalt | 99.5755 | 99.8874 | 99.2657 | 58.8575 | 125031 | 141 | 125041 | 925 | 908 | 98.1622 | |
| ckim-gatk | INDEL | * | * | homalt | 99.5712 | 99.8778 | 99.2664 | 58.9388 | 125019 | 153 | 125032 | 924 | 905 | 97.9437 | |
| raldana-dualsentieon | INDEL | * | * | homalt | 99.5287 | 99.8738 | 99.1860 | 57.6626 | 125014 | 158 | 125023 | 1026 | 1009 | 98.3431 | |
| jmaeng-gatk | INDEL | * | * | homalt | 99.5485 | 99.8690 | 99.2301 | 59.0290 | 125008 | 164 | 125021 | 970 | 941 | 97.0103 | |
| ckim-vqsr | INDEL | * | * | homalt | 99.5675 | 99.8658 | 99.2711 | 58.9429 | 125004 | 168 | 125017 | 918 | 901 | 98.1481 | |
| jli-custom | INDEL | * | * | homalt | 99.7041 | 99.8538 | 99.5548 | 57.2311 | 124989 | 183 | 124999 | 559 | 535 | 95.7066 | |
| ckim-dragen | INDEL | * | * | homalt | 99.2636 | 99.8234 | 98.7101 | 59.5235 | 124951 | 221 | 124887 | 1632 | 1607 | 98.4681 | |
| hfeng-pmm2 | INDEL | * | * | homalt | 99.6594 | 99.8043 | 99.5149 | 55.8756 | 124927 | 245 | 124935 | 609 | 588 | 96.5517 | |
| hfeng-pmm3 | INDEL | * | * | homalt | 99.7023 | 99.7971 | 99.6077 | 55.0410 | 124918 | 254 | 124928 | 492 | 475 | 96.5447 | |