PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
7351-7400 / 86044 show all
anovak-vgSNP*map_l150_m2_e1homalt
88.0784
79.1748
99.2382
72.9549
9364246392497159
83.0986
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.9905
98.3405
99.6492
44.7855
936315893753331
93.9394
astatham-gatkSNPtimap_l150_m1_e0het
85.9873
75.6508
99.5954
82.9552
9358301293543818
47.3684
jmaeng-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.0763
92.8919
95.2913
68.9761
93577169208455419
92.0879
mlin-fermikitSNP*lowcmp_SimpleRepeat_diTR_11to50*
96.0726
96.5229
95.6265
68.5165
93553379380429282
65.7343
ciseli-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
79.6648
84.2067
75.5878
57.5613
93521754948430631008
32.9089
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
75.3642
66.6334
86.7280
50.6405
935046822640404232
57.4257
gduggal-snapvardINDEL**hetalt
0.0000
37.0438
0.0000
0.0000
934815887000
qzeng-customINDELI1_5HG002compoundhet*
82.4804
75.6151
90.7168
64.6037
934330139391961822
85.5359
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
92.4596
98.1094
87.4251
55.1844
9341180933713431337
99.5532
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
80.3927
81.2870
79.5178
59.9939
93352149933324042119
88.1448
ckim-gatkSNPtimap_l150_m1_e0het
84.9286
75.4406
97.1464
89.3093
93323038932827432
11.6788
gduggal-snapvardINDEL*HG002compoundhethetalt
0.0000
37.0482
0.0000
0.0000
932815850000
anovak-vgSNPtimap_l125_m2_e0homalt
89.9353
82.1183
99.3971
67.3107
9327203192335651
91.0714
jlack-gatkINDELD1_5*hetalt
95.0041
90.9322
99.4577
62.5612
931692993545146
90.1961
jmaeng-gatkSNPtimap_l150_m1_e0het
84.7465
75.2789
96.9381
89.5763
93123058930829433
11.2245
asubramanian-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.8573
92.4054
93.3136
74.7428
93087659462678457
67.4041
egarrison-hhgaSNPtiHG002compoundhethet
98.7211
97.8643
99.5931
37.6968
930220393003821
55.2632
mlin-fermikitINDELI6_15*het
88.6098
92.6243
84.9289
50.1273
9293740931516531640
99.2136
jlack-gatkINDELD1_5HG002compoundhethetalt
95.0540
90.9554
99.5394
57.6003
929292492934340
93.0233
qzeng-customSNPtiHG002compoundhethet
98.0838
97.7380
98.4320
42.6883
92902151173918745
24.0642
hfeng-pmm2SNPtvmap_l100_m2_e1homalt
99.8549
99.8602
99.8495
64.9261
9289139289145
35.7143
hfeng-pmm1SNPtvmap_l100_m2_e1homalt
99.8549
99.8495
99.8602
64.8422
9288149288135
38.4615
eyeh-varpipeSNPtvmap_l100_m2_e1homalt
99.8487
99.8280
99.8695
67.1866
9286169182124
33.3333
hfeng-pmm3SNPtvmap_l100_m2_e1homalt
99.8333
99.8065
99.8602
64.7574
9284189284135
38.4615
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.4151
97.5003
99.3472
47.2567
928323892836157
93.4426
astatham-gatkSNPtiHG002compoundhethet
98.7553
97.6644
99.8709
39.9910
928322292811211
91.6667
ckim-vqsrSNPtvmap_sirenhomalt
69.9947
53.8399
100.0000
68.1997
92827958927900
ltrigg-rtg1SNPtvmap_l100_m2_e1homalt
99.8548
99.7850
99.9246
63.4100
928220928174
57.1429
jli-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
98.5033
98.1180
98.8917
42.6441
92801789280104101
97.1154
raldana-dualsentieonSNPtvmap_l100_m2_e1homalt
99.8494
99.7635
99.9354
60.9109
928022928063
50.0000
egarrison-hhgaSNPtvmap_l100_m2_e1homalt
99.8332
99.7312
99.9354
64.6456
927725927765
83.3333
ltrigg-rtg2SNPtvmap_l100_m2_e1homalt
99.8278
99.7097
99.9461
61.3020
927527927453
60.0000
gduggal-bwaplatSNPtvmap_l125_m1_e0*
73.1779
57.8921
99.4316
88.1943
9272674492725313
24.5283
bgallagher-sentieonSNPtvmap_l100_m2_e1homalt
99.7847
99.6667
99.9030
61.6624
927131927196
66.6667
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.5176
97.3637
99.6992
42.0335
927025192822826
92.8571
jli-customSNPtvmap_l100_m2_e1homalt
99.7847
99.6345
99.9353
60.9647
926834926865
83.3333
anovak-vgSNPtvmap_l125_m1_e0het
77.0260
91.5169
66.4968
76.6933
9267859926546681021
21.8723
ndellapenna-hhgaSNPtvmap_l100_m2_e1homalt
99.7631
99.6130
99.9137
63.7862
926636926686
75.0000
gduggal-snapplatSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
91.4324
84.8960
99.0592
66.8074
9263164892668818
20.4545
ckim-dragenSNPtvmap_l100_m2_e1homalt
99.6770
99.5162
99.8382
60.2316
92574592571513
86.6667
astatham-gatkSNPtvmap_l150_m1_e0*
91.6254
84.8240
99.6125
79.0350
9256165692543613
36.1111
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
97.9622
97.8431
98.0816
45.4687
92542049254181176
97.2376
anovak-vgSNP*map_l150_m2_e0homalt
88.0238
79.0922
99.2294
72.9596
9253244691437159
83.0986
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
91.6186
84.8043
99.6235
66.5948
9253165892623513
37.1429
dgrover-gatkSNPtvmap_l100_m2_e1homalt
99.6821
99.4517
99.9136
62.0828
925151925185
62.5000
gduggal-snapvardINDELD1_5HG002complexvarhomalt
91.8287
87.2523
96.9117
42.9901
924713519320297279
93.9394
gduggal-snapfbSNPtiHG002compoundhethet
78.4798
97.2856
65.7667
46.9249
924725894274907174
3.5460
ltrigg-rtg1SNPtiHG002compoundhethet
98.5032
97.2856
99.7516
37.6347
92472589237235
21.7391
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
97.8931
97.7585
98.0280
45.2710
92462129246186181
97.3118