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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
7001-7050 / 86044 show all
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.4016
97.3287
99.4985
47.5257
10129278101185147
92.1569
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
94.5282
97.7986
91.4694
41.2757
1012922810122944934
98.9407
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
93.3161
87.6212
99.8027
73.3610
101221430101182017
85.0000
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.3161
87.6212
99.8027
73.3610
101221430101182017
85.0000
ghariani-varprowlINDELD1_5HG002complexvarhomalt
95.9196
95.4992
96.3438
51.1776
1012147710066382245
64.1361
jpowers-varprowlINDELD1_5HG002complexvarhomalt
96.2485
95.4897
97.0194
51.0621
1012047810058309250
80.9061
jlack-gatkINDELI1_5*hetalt
94.8892
90.3796
99.8725
62.8887
101181077101801312
92.3077
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
93.0148
97.6827
88.7726
47.1861
101172401009712771255
98.2772
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.3558
97.1558
99.5859
47.3310
10111296101014237
88.0952
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.2885
97.1365
99.4681
47.3280
10109298100985438
70.3704
cchapple-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
98.2782
97.1365
99.4471
33.4959
10109298176269890
91.8367
jlack-gatkINDELI1_5HG002compoundhethetalt
94.9037
90.3820
99.9017
57.2515
10102107510162109
90.0000
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.2721
93.5191
89.1304
80.4771
10101700105781290640
49.6124
raldana-dualsentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9604
99.9703
99.9505
48.8948
1009931009955
100.0000
eyeh-varpipeSNPtvmap_l125_m1_e0het
96.7521
99.7334
93.9440
75.6347
1009927999064413
2.0186
hfeng-pmm1SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9703
99.9604
99.9802
50.4100
1009841009822
100.0000
anovak-vgINDELD1_5HG002complexvarhomalt
92.9611
95.2727
90.7590
57.9711
10097501102241041840
80.6916
bgallagher-sentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9456
99.9406
99.9505
49.3379
1009661009655
100.0000
dgrover-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9554
99.9406
99.9703
49.4797
1009661009633
100.0000
hfeng-pmm2SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9505
99.9307
99.9703
51.1679
1009571009532
66.6667
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
97.9616
97.0020
98.9403
47.2355
1009531210084108100
92.5926
jli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9406
99.9307
99.9505
49.4545
1009571009553
60.0000
hfeng-pmm3SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9406
99.9208
99.9604
49.7187
1009481009443
75.0000
mlin-fermikitSNP*map_l125_m2_e0homalt
66.1120
58.0777
76.7260
57.2932
1009172841009130612900
94.7403
jpowers-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.9694
99.9307
96.0837
66.5958
10090710108412277
67.2330
hfeng-pmm2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9455
99.9208
99.9703
62.5348
1008981008933
100.0000
jlack-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8960
99.8713
99.9208
48.6105
10089131008987
87.5000
ghariani-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.8554
99.9208
95.8736
65.4859
10089810107435273
62.7586
raldana-dualsentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9306
99.8911
99.9703
61.3700
10086111008633
100.0000
astatham-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8317
99.9703
49.2989
10085171008533
100.0000
jpowers-varprowlSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.5573
99.8218
95.3932
57.7564
100841810105488257
52.6639
ckim-dragenSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8713
99.8218
99.9208
48.8376
10084181009388
100.0000
ckim-dragenSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9158
99.8613
99.9703
61.4918
10083141008533
100.0000
rpoplin-dv42SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8762
99.8119
99.9405
50.3909
10083191008365
83.3333
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8811
99.8613
99.9009
61.7921
100831410083102
20.0000
hfeng-pmm3SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9108
99.8613
99.9603
61.0721
10083141008344
100.0000
ghariani-varprowlSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.8165
99.8119
95.8994
55.8743
100831910103432262
60.6481
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8514
99.9504
61.6260
10082151008255
100.0000
hfeng-pmm1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9059
99.8514
99.9603
61.6429
10082151008244
100.0000
jlack-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8910
99.8415
99.9405
60.8743
10081161008166
100.0000
dgrover-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8415
99.9603
61.7282
10081161008144
100.0000
jli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8860
99.8316
99.9405
61.6312
10080171008064
66.6667
gduggal-snapplatSNP*HG002compoundhethomalt
94.8523
93.4799
96.2656
42.1750
1007970310002388273
70.3608
jpowers-varprowlSNPtvmap_l125_m2_e0het
96.3204
96.5141
96.1274
80.0949
100783641007840694
23.1527
jmaeng-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8563
99.7624
99.9504
49.5168
10078241007855
100.0000
ciseli-customSNP*HG002compoundhethomalt
82.3846
93.4613
73.6552
42.1506
10077705100373590971
27.0474
cchapple-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8364
99.7525
99.9204
39.9139
10077251003686
75.0000
ckim-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8514
99.7426
99.9603
49.3467
10076261007644
100.0000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
95.7239
96.8194
94.6529
42.8294
1007633116976959707
73.7226
qzeng-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7317
99.7821
99.6812
62.4851
1007522100073221
65.6250