PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6751-6800 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D1_5 | HG002complexvar | homalt | 99.9010 | 99.9151 | 99.8868 | 59.4114 | 10589 | 9 | 10593 | 12 | 10 | 83.3333 | |
| bgallagher-sentieon | INDEL | D1_5 | HG002complexvar | homalt | 99.8445 | 99.9151 | 99.7740 | 60.1815 | 10589 | 9 | 10594 | 24 | 22 | 91.6667 | |
| astatham-gatk | INDEL | D1_5 | HG002complexvar | homalt | 99.8868 | 99.8962 | 99.8774 | 60.2109 | 10587 | 11 | 10592 | 13 | 11 | 84.6154 | |
| hfeng-pmm2 | INDEL | I1_5 | HG002compoundhet | hetalt | 97.2799 | 94.7124 | 99.9906 | 57.4359 | 10586 | 591 | 10643 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | HG002complexvar | homalt | 99.8962 | 99.8773 | 99.9151 | 58.2388 | 10585 | 13 | 10590 | 9 | 8 | 88.8889 | |
| ckim-gatk | INDEL | D1_5 | HG002complexvar | homalt | 99.8633 | 99.8773 | 99.8492 | 60.1757 | 10585 | 13 | 10592 | 16 | 14 | 87.5000 | |
| jmaeng-gatk | INDEL | D1_5 | HG002complexvar | homalt | 99.8538 | 99.8679 | 99.8397 | 60.1891 | 10584 | 14 | 10591 | 17 | 15 | 88.2353 | |
| ckim-vqsr | INDEL | D1_5 | HG002complexvar | homalt | 99.8538 | 99.8585 | 99.8491 | 60.1802 | 10583 | 15 | 10590 | 16 | 14 | 87.5000 | |
| astatham-gatk | INDEL | I1_5 | * | hetalt | 97.1674 | 94.5243 | 99.9624 | 62.1019 | 10582 | 613 | 10645 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | SNP | ti | map_l125_m1_e0 | homalt | 97.7417 | 95.8081 | 99.7549 | 73.6978 | 10582 | 463 | 10583 | 26 | 14 | 53.8462 | |
| hfeng-pmm2 | INDEL | D1_5 | HG002complexvar | homalt | 99.8773 | 99.8396 | 99.9150 | 58.5881 | 10581 | 17 | 10585 | 9 | 7 | 77.7778 | |
| jlack-gatk | INDEL | D1_5 | HG002complexvar | homalt | 99.8161 | 99.8396 | 99.7926 | 59.1577 | 10581 | 17 | 10588 | 22 | 21 | 95.4545 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002complexvar | homalt | 99.8679 | 99.8207 | 99.9150 | 58.2795 | 10579 | 19 | 10583 | 9 | 8 | 88.8889 | |
| hfeng-pmm1 | INDEL | I1_5 | * | hetalt | 97.1621 | 94.4975 | 99.9812 | 62.7564 | 10579 | 616 | 10637 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | tv | map_l150_m1_e0 | * | 96.2415 | 96.9483 | 95.5449 | 77.7956 | 10579 | 333 | 10573 | 493 | 81 | 16.4300 | |
| ckim-dragen | INDEL | D1_5 | HG002complexvar | homalt | 99.7544 | 99.8207 | 99.6881 | 60.4958 | 10579 | 19 | 10549 | 33 | 30 | 90.9091 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.1902 | 91.5599 | 99.1202 | 67.5348 | 10577 | 975 | 10478 | 93 | 44 | 47.3118 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.1902 | 91.5599 | 99.1202 | 67.5348 | 10577 | 975 | 10478 | 93 | 44 | 47.3118 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 92.2062 | 93.5907 | 90.8621 | 57.8426 | 10572 | 724 | 10550 | 1061 | 847 | 79.8303 | |
| hfeng-pmm3 | INDEL | I1_5 | * | hetalt | 97.1290 | 94.4350 | 99.9812 | 61.2138 | 10572 | 623 | 10632 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | * | hetalt | 0.0000 | 94.3993 | 0.0000 | 0.0000 | 10568 | 627 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 64.3466 | 65.7191 | 63.0303 | 66.4559 | 10565 | 5511 | 13341 | 7825 | 6132 | 78.3642 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 64.3466 | 65.7191 | 63.0303 | 66.4559 | 10565 | 5511 | 13341 | 7825 | 6132 | 78.3642 | |
| astatham-gatk | INDEL | I1_5 | HG002compoundhet | hetalt | 97.1718 | 94.5245 | 99.9718 | 56.8751 | 10565 | 612 | 10626 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 64.2360 | 57.8454 | 72.2140 | 63.0306 | 10562 | 7697 | 13647 | 5251 | 3074 | 58.5412 | |
| hfeng-pmm1 | INDEL | I1_5 | HG002compoundhet | hetalt | 97.1665 | 94.4976 | 99.9906 | 57.5817 | 10562 | 615 | 10618 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 87.7327 | 97.7687 | 79.5653 | 85.1430 | 10560 | 241 | 10653 | 2736 | 243 | 8.8816 | |
| rpoplin-dv42 | INDEL | D1_5 | HG002complexvar | homalt | 99.7026 | 99.6414 | 99.7639 | 58.4249 | 10560 | 38 | 10565 | 25 | 23 | 92.0000 | |
| asubramanian-gatk | INDEL | D1_5 | HG002complexvar | homalt | 99.7403 | 99.6226 | 99.8582 | 60.0860 | 10558 | 40 | 10565 | 15 | 13 | 86.6667 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.1911 | 97.7409 | 98.6454 | 80.0759 | 10557 | 244 | 10559 | 145 | 73 | 50.3448 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.1813 | 97.7317 | 92.7606 | 85.9802 | 10556 | 245 | 10635 | 830 | 248 | 29.8795 | |
| hfeng-pmm3 | INDEL | I1_5 | HG002compoundhet | hetalt | 97.1381 | 94.4439 | 99.9906 | 55.8738 | 10556 | 621 | 10614 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.4426 | 95.0383 | 99.9718 | 29.9341 | 10554 | 551 | 10633 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 0.0000 | 94.4082 | 0.0000 | 0.0000 | 10552 | 625 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | HG002complexvar | homalt | 99.5858 | 99.5565 | 99.6150 | 53.3069 | 10551 | 47 | 10092 | 39 | 36 | 92.3077 | |
| ltrigg-rtg1 | SNP | * | HG002compoundhet | homalt | 98.8047 | 97.7741 | 99.8572 | 33.1849 | 10542 | 240 | 10491 | 15 | 8 | 53.3333 | |
| gduggal-snapvard | SNP | tv | map_l150_m1_e0 | * | 91.4337 | 96.5909 | 86.7993 | 81.5080 | 10540 | 372 | 10514 | 1599 | 100 | 6.2539 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.3063 | 91.2223 | 99.7730 | 55.8289 | 10538 | 1014 | 10551 | 24 | 18 | 75.0000 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.3063 | 91.2223 | 99.7730 | 55.8289 | 10538 | 1014 | 10551 | 24 | 18 | 75.0000 | |
| jpowers-varprowl | SNP | tv | map_l150_m1_e0 | * | 96.7188 | 96.5726 | 96.8655 | 80.4419 | 10538 | 374 | 10538 | 341 | 91 | 26.6862 | |
| gduggal-snapfb | SNP | tv | map_l150_m1_e0 | * | 96.2193 | 96.5634 | 95.8777 | 77.9802 | 10537 | 375 | 10536 | 453 | 179 | 39.5143 | |
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 55.8462 | 84.1067 | 41.8008 | 48.8238 | 10531 | 1990 | 10594 | 14750 | 14683 | 99.5458 | |
| ltrigg-rtg1 | INDEL | I1_5 | * | hetalt | 96.8345 | 94.0598 | 99.7778 | 71.7595 | 10530 | 665 | 10776 | 24 | 24 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.5431 | 94.7785 | 92.3395 | 52.9259 | 10528 | 580 | 10511 | 872 | 826 | 94.7248 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 67.7028 | 91.6754 | 53.6688 | 45.2639 | 10528 | 956 | 14570 | 12578 | 12360 | 98.2668 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e1 | het | 96.8040 | 99.7441 | 94.0321 | 77.0079 | 10526 | 27 | 10415 | 661 | 13 | 1.9667 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.3740 | 98.0805 | 98.6692 | 39.1607 | 10526 | 206 | 10528 | 142 | 102 | 71.8310 | |
| jmaeng-gatk | SNP | * | map_l125_m1_e0 | homalt | 76.7144 | 62.2360 | 99.9715 | 73.5225 | 10521 | 6384 | 10521 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | HG002compoundhet | * | 88.8135 | 85.9501 | 91.8743 | 43.5269 | 10516 | 1719 | 10436 | 923 | 829 | 89.8158 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.5597 | 97.9780 | 97.1450 | 52.3866 | 10515 | 217 | 10446 | 307 | 67 | 21.8241 | |