PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6651-6700 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | * | HG002compoundhet | homalt | 98.7381 | 99.4064 | 98.0787 | 35.7852 | 10718 | 64 | 10720 | 210 | 197 | 93.8095 | |
| ndellapenna-hhga | SNP | tv | map_l150_m1_e0 | * | 98.9384 | 98.2221 | 99.6652 | 71.6791 | 10718 | 194 | 10718 | 36 | 17 | 47.2222 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9752 | 96.7154 | 99.2683 | 46.8913 | 10718 | 364 | 10718 | 79 | 74 | 93.6709 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9618 | 96.7154 | 99.2407 | 47.8941 | 10718 | 364 | 10718 | 82 | 78 | 95.1220 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.5046 | 98.2128 | 94.8548 | 61.3261 | 10716 | 195 | 10711 | 581 | 92 | 15.8348 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.7675 | 99.8416 | 99.6935 | 39.2563 | 10715 | 17 | 10732 | 33 | 4 | 12.1212 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.6239 | 99.8416 | 99.4072 | 41.3357 | 10715 | 17 | 10732 | 64 | 7 | 10.9375 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.5877 | 98.1945 | 98.9841 | 59.2905 | 10714 | 197 | 10620 | 109 | 34 | 31.1927 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 91.0653 | 90.2147 | 91.9320 | 48.7934 | 10713 | 1162 | 10768 | 945 | 395 | 41.7989 | |
| gduggal-snapfb | SNP | * | segdup | homalt | 99.6002 | 99.7114 | 99.4891 | 90.4625 | 10712 | 31 | 10711 | 55 | 17 | 30.9091 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.6411 | 98.1762 | 97.1119 | 60.4037 | 10712 | 199 | 11029 | 328 | 130 | 39.6341 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0614 | 99.8136 | 98.3203 | 43.6922 | 10712 | 20 | 10712 | 183 | 5 | 2.7322 | |
| gduggal-snapvard | SNP | tv | map_l100_m0_e0 | * | 91.8069 | 96.6258 | 87.4458 | 78.2460 | 10710 | 374 | 10685 | 1534 | 85 | 5.5411 | |
| gduggal-bwafb | SNP | * | segdup | homalt | 99.7625 | 99.6928 | 99.8322 | 89.4414 | 10710 | 33 | 10710 | 18 | 18 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 70.9466 | 66.7041 | 75.7654 | 53.5142 | 10704 | 5343 | 10864 | 3475 | 3422 | 98.4748 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4564 | 99.7391 | 99.1754 | 42.0292 | 10704 | 28 | 10704 | 89 | 2 | 2.2472 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | homalt | 55.9994 | 38.8911 | 99.9813 | 79.7534 | 10704 | 16819 | 10704 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.7849 | 99.1019 | 98.4699 | 79.4919 | 10704 | 97 | 10747 | 167 | 2 | 1.1976 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.2106 | 96.5536 | 99.9255 | 53.9316 | 10702 | 382 | 10737 | 8 | 3 | 37.5000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 78.5618 | 72.3842 | 85.8922 | 52.6470 | 10702 | 4083 | 10825 | 1778 | 1586 | 89.2013 | |
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5812 | 99.7018 | 99.4609 | 42.3318 | 10700 | 32 | 10700 | 58 | 2 | 3.4483 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6965 | 98.0478 | 99.3539 | 59.8156 | 10698 | 213 | 10610 | 69 | 47 | 68.1159 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.3007 | 99.0279 | 99.5750 | 78.5377 | 10696 | 105 | 10777 | 46 | 21 | 45.6522 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m1_e0 | * | 98.8720 | 98.0022 | 99.7574 | 65.7671 | 10694 | 218 | 10693 | 26 | 6 | 23.0769 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.1305 | 99.0001 | 99.2612 | 79.9407 | 10693 | 108 | 10748 | 80 | 26 | 32.5000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 77.6152 | 64.0108 | 98.5632 | 45.9265 | 10693 | 6012 | 10153 | 148 | 131 | 88.5135 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 77.6152 | 64.0108 | 98.5632 | 45.9265 | 10693 | 6012 | 10153 | 148 | 131 | 88.5135 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | * | 93.9183 | 97.9839 | 90.1767 | 82.0762 | 10692 | 220 | 10667 | 1162 | 50 | 4.3029 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3788 | 99.6180 | 99.1407 | 38.1189 | 10691 | 41 | 10730 | 93 | 1 | 1.0753 | |
| gduggal-snapfb | SNP | * | map_l150_m1_e0 | homalt | 97.1242 | 94.8195 | 99.5437 | 79.7473 | 10689 | 584 | 10689 | 49 | 20 | 40.8163 | |
| gduggal-snapfb | SNP | * | HG002compoundhet | homalt | 96.1466 | 99.1282 | 93.3392 | 44.8696 | 10688 | 94 | 10692 | 763 | 275 | 36.0419 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 77.7997 | 63.9808 | 99.2322 | 42.2569 | 10688 | 6017 | 10856 | 84 | 82 | 97.6190 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 77.7997 | 63.9808 | 99.2322 | 42.2569 | 10688 | 6017 | 10856 | 84 | 82 | 97.6190 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.4422 | 96.4266 | 98.4794 | 49.9423 | 10686 | 396 | 10686 | 165 | 162 | 98.1818 | |
| ciseli-custom | SNP | * | segdup | homalt | 98.3606 | 99.4694 | 97.2762 | 88.7149 | 10686 | 57 | 10607 | 297 | 168 | 56.5657 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.4056 | 99.5621 | 95.3406 | 49.3281 | 10685 | 47 | 10497 | 513 | 52 | 10.1365 | |
| cchapple-custom | SNP | * | HG002compoundhet | homalt | 99.5150 | 99.0818 | 99.9520 | 31.0764 | 10683 | 99 | 10419 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2583 | 99.5434 | 98.9748 | 37.3981 | 10683 | 49 | 10716 | 111 | 5 | 4.5045 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.7826 | 98.8983 | 96.6918 | 85.1220 | 10682 | 119 | 10756 | 368 | 69 | 18.7500 | |
| eyeh-varpipe | INDEL | D6_15 | * | het | 91.9882 | 92.1325 | 91.8444 | 46.7075 | 10680 | 912 | 10079 | 895 | 860 | 96.0894 | |
| ckim-gatk | SNP | * | HG002compoundhet | homalt | 99.4644 | 99.0354 | 99.8971 | 35.0629 | 10678 | 104 | 10677 | 11 | 10 | 90.9091 | |
| jmaeng-gatk | SNP | * | HG002compoundhet | homalt | 99.4551 | 99.0262 | 99.8877 | 35.0471 | 10677 | 105 | 10676 | 12 | 11 | 91.6667 | |
| cchapple-custom | SNP | ti | map_l125_m1_e0 | homalt | 98.2873 | 96.6410 | 99.9906 | 60.9405 | 10674 | 371 | 10672 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1042 | 99.4409 | 98.7698 | 49.5614 | 10672 | 60 | 10678 | 133 | 13 | 9.7744 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4310 | 98.7964 | 96.1027 | 79.7737 | 10671 | 130 | 10702 | 434 | 19 | 4.3779 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5533 | 98.7871 | 98.3205 | 78.4263 | 10670 | 131 | 10713 | 183 | 3 | 1.6393 | |
| ltrigg-rtg2 | SNP | * | HG002compoundhet | homalt | 99.4265 | 98.9241 | 99.9340 | 32.8863 | 10666 | 116 | 10603 | 7 | 6 | 85.7143 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.5773 | 96.2462 | 96.9108 | 49.8130 | 10666 | 416 | 10666 | 340 | 299 | 87.9412 | |
| jpowers-varprowl | INDEL | D6_15 | * | het | 70.9404 | 91.9945 | 57.7285 | 54.4042 | 10664 | 928 | 10689 | 7827 | 7764 | 99.1951 | |
| qzeng-custom | SNP | * | HG002compoundhet | homalt | 98.8868 | 98.8963 | 98.8772 | 42.3069 | 10663 | 119 | 8190 | 93 | 74 | 79.5699 | |