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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 129 130 131 132 133 134 135 136 137 ... 1720 1721 » 6601-6650 / 86044 show all
ghariani-varprowl	SNP	*	HG002compoundhet	homalt	89.8311	99.8331	81.6508	42.6198	10764	18	10773	2421	2004	82.7757
rpoplin-dv42	SNP	*	HG002compoundhet	homalt	99.7682	99.8331	99.7035	35.1268	10764	18	10759	32	29	90.6250
jpowers-varprowl	SNP	*	HG002compoundhet	homalt	89.3414	99.8238	80.8512	43.1364	10763	19	10771	2551	2008	78.7142
gduggal-bwafb	SNP	tv	map_l150_m1_e0	*	98.4669	98.5887	98.3454	76.8340	10758	154	10758	181	38	20.9945
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.6387	99.6019	99.6756	81.2035	10758	43	10754	35	19	54.2857
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.1747	97.0673	99.3076	46.3948	10757	325	10757	75	72	96.0000
gduggal-bwavard	SNP	ti	map_l125_m1_e0	homalt	98.6148	97.3744	99.8872	66.1535	10755	290	10628	12	9	75.0000
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	92.2052	90.5600	93.9113	48.2920	10754	1121	12339	800	737	92.1250
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.3258	97.0402	99.6459	43.8344	10754	328	10693	38	34	89.4737
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4405	99.5463	99.3348	79.5031	10752	49	10752	72	13	18.0556
mlin-fermikit	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	80.9211	77.9906	84.0804	49.2093	10751	3034	10748	2035	2023	99.4103
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5462	99.5186	99.5739	79.3195	10749	52	10749	46	13	28.2609
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5323	99.5000	99.5646	79.8322	10747	54	10747	47	15	31.9149
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5044	99.4538	99.5551	80.0137	10742	59	10742	48	17	35.4167
gduggal-snapvard	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	97.4077	95.0956	99.8350	48.2245	10742	554	19971	33	33	100.0000
rpoplin-dv42	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.2389	96.9229	97.5570	48.8051	10741	341	10742	269	266	98.8848
ghariani-varprowl	SNP	tv	map_l150_m1_e0	*	96.9968	98.4146	95.6193	80.2097	10739	173	10739	492	89	18.0894
ltrigg-rtg2	SNP	*	segdup	homalt	99.7490	99.9628	99.5362	88.2598	10739	4	10731	50	50	100.0000
ndellapenna-hhga	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	78.5723	72.6344	85.5675	52.9869	10739	4046	10909	1840	1594	86.6304
hfeng-pmm3	SNP	*	segdup	homalt	99.9395	99.9535	99.9256	88.8624	10738	5	10738	8	8	100.0000
hfeng-pmm1	SNP	*	segdup	homalt	99.9256	99.9535	99.8977	88.8973	10738	5	10738	11	11	100.0000
hfeng-pmm2	SNP	*	segdup	homalt	99.9116	99.9441	99.8791	88.8962	10737	6	10737	13	13	100.0000
jpowers-varprowl	SNP	*	segdup	homalt	99.4812	99.9441	99.0225	89.9716	10737	6	10738	106	65	61.3208
gduggal-bwafb	SNP	*	HG002compoundhet	homalt	99.2787	99.5826	98.9767	38.6655	10737	45	10736	111	91	81.9820
eyeh-varpipe	SNP	*	segdup	homalt	99.9005	99.9348	99.8662	89.0870	10736	7	10453	14	14	100.0000
ltrigg-rtg1	SNP	*	segdup	homalt	99.7351	99.9348	99.5361	88.6997	10736	7	10729	50	50	100.0000
ghariani-varprowl	SNP	*	segdup	homalt	99.4257	99.9069	98.9491	89.5722	10733	10	10734	114	65	57.0175
egarrison-hhga	SNP	*	segdup	homalt	99.7815	99.8976	99.6657	89.1087	10732	11	10732	36	36	100.0000
jli-custom	SNP	*	segdup	homalt	99.9023	99.8976	99.9069	88.0536	10732	11	10732	10	10	100.0000
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.1500	99.3519	98.9488	79.8585	10731	70	10731	114	27	23.6842
rpoplin-dv42	SNP	*	segdup	homalt	99.8140	99.8883	99.7398	89.1939	10731	12	10731	28	28	100.0000
raldana-dualsentieon	SNP	*	segdup	homalt	99.9022	99.8883	99.9162	87.9114	10731	12	10731	9	9	100.0000
mlin-fermikit	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.7576	98.3503	99.1683	60.5203	10731	180	10731	90	83	92.2222
ndellapenna-hhga	SNP	*	segdup	homalt	99.7258	99.8883	99.5639	88.9154	10731	12	10731	47	47	100.0000
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5131	99.3427	99.6841	80.0486	10730	71	10730	34	12	35.2941
cchapple-custom	SNP	*	segdup	homalt	99.8463	99.8790	99.8136	87.7694	10730	13	10710	20	20	100.0000
ckim-dragen	SNP	*	segdup	homalt	99.9022	99.8790	99.9255	87.7402	10730	13	10730	8	8	100.0000
dgrover-gatk	SNP	*	segdup	homalt	99.8976	99.8790	99.9162	88.2042	10730	13	10730	9	9	100.0000
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4808	99.3427	99.6193	80.0419	10730	71	10730	41	17	41.4634
bgallagher-sentieon	SNP	*	segdup	homalt	99.8883	99.8697	99.9069	88.1168	10729	14	10729	10	10	100.0000
eyeh-varpipe	SNP	*	HG002compoundhet	homalt	97.1233	99.4992	94.8583	47.6589	10728	54	3616	196	81	41.3265
jlack-gatk	SNP	*	segdup	homalt	99.8743	99.8418	99.9069	88.3916	10726	17	10726	10	10	100.0000
jli-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5868	99.9441	99.2321	39.7088	10726	6	10726	83	1	1.2048
astatham-gatk	SNP	*	segdup	homalt	99.8696	99.8324	99.9068	88.1147	10725	18	10725	10	10	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.4573	99.8975	99.0210	40.1856	10721	11	10721	106	1	0.9434
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.5866	99.8975	99.2777	41.4403	10721	11	10721	78	1	1.2821
jpowers-varprowl	SNP	tv	map_l100_m0_e0	*	96.7509	96.7160	96.7858	76.5215	10720	364	10720	356	89	25.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.8882	99.8789	99.8975	38.7986	10719	13	10717	11	5	45.4545
egarrison-hhga	SNP	*	HG002compoundhet	homalt	99.2639	99.4064	99.1218	35.3785	10718	64	10722	95	82	86.3158
gduggal-snapfb	SNP	tv	map_l100_m0_e0	*	96.3071	96.6979	95.9195	73.9602	10718	366	10719	456	169	37.0614

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