PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6501-6550 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | * | 98.9920 | 98.3490 | 99.6435 | 65.9868 | 10901 | 183 | 10901 | 39 | 17 | 43.5897 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.7554 | 98.3399 | 99.1744 | 57.4612 | 10900 | 184 | 10811 | 90 | 55 | 61.1111 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9129 | 99.8992 | 99.9266 | 60.1913 | 10900 | 11 | 10896 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9175 | 99.8900 | 99.9450 | 60.3037 | 10899 | 12 | 10895 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | SNP | ti | map_l125_m2_e0 | homalt | 97.8264 | 95.9500 | 99.7776 | 68.4862 | 10898 | 460 | 10766 | 24 | 19 | 79.1667 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8701 | 98.1095 | 99.6426 | 59.5927 | 10898 | 210 | 10873 | 39 | 20 | 51.2821 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8488 | 99.8809 | 99.8167 | 61.3691 | 10898 | 13 | 10894 | 20 | 5 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9221 | 99.8717 | 99.9725 | 60.1200 | 10897 | 14 | 10893 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7118 | 98.0915 | 99.3400 | 56.1553 | 10896 | 212 | 10837 | 72 | 12 | 16.6667 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.6957 | 98.3216 | 99.0726 | 47.6211 | 10896 | 186 | 10896 | 102 | 98 | 96.0784 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8854 | 99.8625 | 99.9082 | 58.4392 | 10896 | 15 | 10886 | 10 | 6 | 60.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7641 | 99.8350 | 99.6932 | 57.1024 | 10893 | 18 | 10724 | 33 | 14 | 42.4242 | |
| gduggal-snapfb | SNP | ti | map_l125_m2_e0 | homalt | 97.7959 | 95.9060 | 99.7619 | 75.2353 | 10893 | 465 | 10894 | 26 | 14 | 53.8462 | |
| jpowers-varprowl | SNP | ti | map_l125_m1_e0 | homalt | 99.2166 | 98.6148 | 99.8259 | 68.6168 | 10892 | 153 | 10892 | 19 | 15 | 78.9474 | |
| ghariani-varprowl | SNP | ti | map_l125_m1_e0 | homalt | 99.2029 | 98.5967 | 99.8167 | 66.5358 | 10890 | 155 | 10890 | 20 | 15 | 75.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 82.5569 | 70.6298 | 99.3305 | 60.9945 | 10889 | 4528 | 10979 | 74 | 74 | 100.0000 | |
| anovak-vg | SNP | * | func_cds | het | 98.2393 | 97.5540 | 98.9342 | 34.7247 | 10888 | 273 | 10861 | 117 | 70 | 59.8291 | |
| jlack-gatk | SNP | ti | map_l125_m1_e0 | homalt | 99.2298 | 98.5695 | 99.8991 | 63.8084 | 10887 | 158 | 10887 | 11 | 9 | 81.8182 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.9176 | 98.2314 | 99.6135 | 43.6336 | 10886 | 196 | 10826 | 42 | 39 | 92.8571 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8349 | 99.7617 | 99.9082 | 57.3447 | 10885 | 26 | 10888 | 10 | 6 | 60.0000 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.1980 | 95.1981 | 99.2838 | 34.4662 | 10884 | 549 | 10951 | 79 | 11 | 13.9241 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8395 | 99.7434 | 99.9357 | 57.3637 | 10883 | 28 | 10887 | 7 | 4 | 57.1429 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8303 | 99.7434 | 99.9174 | 59.7828 | 10883 | 28 | 10881 | 9 | 5 | 55.5556 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | * | 97.4561 | 99.7067 | 95.3048 | 77.8264 | 10880 | 32 | 10819 | 533 | 14 | 2.6266 | |
| cchapple-custom | SNP | * | map_l150_m1_e0 | homalt | 98.2123 | 96.4961 | 99.9908 | 66.3750 | 10878 | 395 | 10874 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8394 | 99.6976 | 99.9816 | 59.7625 | 10878 | 33 | 10875 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8348 | 99.6884 | 99.9816 | 59.7111 | 10877 | 34 | 10874 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.2830 | 86.8621 | 93.9845 | 38.9075 | 10876 | 1645 | 16608 | 1063 | 1029 | 96.8015 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7844 | 99.6701 | 99.8990 | 60.1508 | 10875 | 36 | 10875 | 11 | 9 | 81.8182 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6838 | 99.6701 | 99.6976 | 61.7359 | 10875 | 36 | 10878 | 33 | 21 | 63.6364 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8164 | 99.6701 | 99.9632 | 59.9499 | 10875 | 36 | 10872 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8072 | 99.6609 | 99.9540 | 61.5860 | 10874 | 37 | 10870 | 5 | 2 | 40.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7843 | 99.6517 | 99.9173 | 61.4911 | 10873 | 38 | 10869 | 9 | 5 | 55.5556 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8118 | 99.6334 | 99.9908 | 59.9447 | 10871 | 40 | 10868 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2467 | 99.6334 | 98.8630 | 62.3274 | 10871 | 40 | 10869 | 125 | 24 | 19.2000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.2421 | 98.0870 | 98.3978 | 52.9535 | 10870 | 212 | 10870 | 177 | 173 | 97.7401 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7292 | 99.5876 | 99.8713 | 60.0265 | 10866 | 45 | 10866 | 14 | 10 | 71.4286 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e1 | homalt | 56.2073 | 39.0920 | 99.9816 | 79.6586 | 10866 | 16930 | 10866 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1969 | 98.0419 | 98.3525 | 52.6692 | 10865 | 217 | 10865 | 182 | 178 | 97.8022 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.1518 | 97.8124 | 92.6322 | 56.2191 | 10865 | 243 | 11001 | 875 | 754 | 86.1714 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.2300 | 99.5784 | 96.9176 | 63.0014 | 10865 | 46 | 10879 | 346 | 49 | 14.1618 | |
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.5583 | 98.0061 | 97.1145 | 57.2508 | 10863 | 221 | 11039 | 328 | 130 | 39.6341 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | * | 98.8489 | 98.0061 | 99.7063 | 58.4119 | 10863 | 221 | 10862 | 32 | 6 | 18.7500 | |
| ltrigg-rtg2 | INDEL | I1_5 | * | hetalt | 98.3546 | 97.0076 | 99.7395 | 72.4903 | 10860 | 335 | 11105 | 29 | 29 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6831 | 99.5234 | 99.8433 | 60.8736 | 10859 | 52 | 10830 | 17 | 7 | 41.1765 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.1588 | 93.9924 | 96.3545 | 65.5291 | 10858 | 694 | 10969 | 415 | 307 | 73.9759 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.1588 | 93.9924 | 96.3545 | 65.5291 | 10858 | 694 | 10969 | 415 | 307 | 73.9759 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1731 | 97.9516 | 98.3956 | 52.7295 | 10855 | 227 | 10855 | 177 | 173 | 97.7401 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9381 | 97.9340 | 99.9631 | 55.1737 | 10855 | 229 | 10848 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | HG002compoundhet | * | 91.0728 | 88.7045 | 93.5709 | 64.7882 | 10853 | 1382 | 11658 | 801 | 716 | 89.3883 | |