PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6301-6350 / 86044 show all | |||||||||||||||
| jlack-gatk | SNP | tv | map_l150_m2_e0 | * | 94.5181 | 98.7142 | 90.6642 | 84.3431 | 11209 | 146 | 11207 | 1154 | 67 | 5.8059 | |
| jpowers-varprowl | SNP | ti | map_l125_m2_e0 | homalt | 99.2383 | 98.6529 | 99.8307 | 70.9546 | 11205 | 153 | 11205 | 19 | 15 | 78.9474 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 94.7857 | 94.3579 | 95.2175 | 45.4647 | 11205 | 670 | 11209 | 563 | 510 | 90.5861 | |
| ghariani-varprowl | SNP | ti | map_l125_m2_e0 | homalt | 99.2250 | 98.6353 | 99.8218 | 69.1124 | 11203 | 155 | 11203 | 20 | 15 | 75.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 71.6876 | 76.6436 | 67.3336 | 60.9234 | 11203 | 3414 | 12081 | 5861 | 3450 | 58.8637 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | * | 98.5004 | 98.6262 | 98.3749 | 78.4095 | 11199 | 156 | 11199 | 185 | 38 | 20.5405 | |
| jlack-gatk | SNP | ti | map_l125_m2_e0 | homalt | 99.2423 | 98.5913 | 99.9019 | 66.3888 | 11198 | 160 | 11198 | 11 | 9 | 81.8182 | |
| gduggal-snapvard | SNP | * | map_l150_m2_e0 | homalt | 97.6688 | 95.7005 | 99.7199 | 73.1870 | 11196 | 503 | 11035 | 31 | 25 | 80.6452 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.4262 | 96.9096 | 99.9911 | 63.7599 | 11195 | 357 | 11199 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.4262 | 96.9096 | 99.9911 | 63.7599 | 11195 | 357 | 11199 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2066 | 99.0882 | 99.3253 | 55.9755 | 11193 | 103 | 11189 | 76 | 58 | 76.3158 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 60.5216 | 54.3406 | 68.2890 | 64.1858 | 11192 | 9404 | 14564 | 6763 | 3696 | 54.6503 | |
| cchapple-custom | SNP | * | map_l100_m0_e0 | homalt | 98.1150 | 96.3081 | 99.9911 | 57.3704 | 11191 | 429 | 11188 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.5596 | 97.4138 | 99.7327 | 50.5529 | 11187 | 297 | 11193 | 30 | 28 | 93.3333 | |
| ckim-dragen | SNP | * | map_l150_m1_e0 | homalt | 99.4842 | 99.2194 | 99.7504 | 65.7675 | 11185 | 88 | 11190 | 28 | 25 | 89.2857 | |
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | homalt | 76.7378 | 62.2661 | 99.9732 | 69.0460 | 11183 | 6777 | 11172 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.0261 | 98.9819 | 99.0704 | 52.1206 | 11181 | 115 | 22167 | 208 | 201 | 96.6346 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 88.9438 | 97.7871 | 81.5673 | 65.0094 | 11180 | 253 | 11085 | 2505 | 89 | 3.5529 | |
| ghariani-varprowl | SNP | tv | map_l150_m2_e0 | * | 97.0484 | 98.4500 | 95.6860 | 81.5364 | 11179 | 176 | 11179 | 504 | 90 | 17.8571 | |
| dgrover-gatk | SNP | * | map_l150_m1_e0 | homalt | 99.5103 | 99.1484 | 99.8749 | 68.8906 | 11177 | 96 | 11177 | 14 | 10 | 71.4286 | |
| cchapple-custom | SNP | tv | map_l150_m2_e1 | * | 96.3274 | 97.0614 | 95.6045 | 79.4325 | 11164 | 338 | 11158 | 513 | 83 | 16.1793 | |
| ciseli-custom | SNP | * | HG002compoundhet | het | 65.9081 | 78.7276 | 56.6789 | 49.8597 | 11162 | 3016 | 11240 | 8591 | 230 | 2.6772 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e1 | homalt | 98.6250 | 97.3905 | 99.8913 | 68.5234 | 11159 | 299 | 11030 | 12 | 9 | 75.0000 | |
| bgallagher-sentieon | SNP | * | func_cds | het | 99.8344 | 99.9731 | 99.6961 | 26.0085 | 11158 | 3 | 11155 | 34 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m2_e0 | * | 98.9623 | 98.2651 | 99.6695 | 73.4684 | 11158 | 197 | 11158 | 37 | 17 | 45.9459 | |
| jlack-gatk | SNP | * | func_cds | het | 98.8875 | 99.9731 | 97.8251 | 36.6500 | 11158 | 3 | 11155 | 248 | 1 | 0.4032 | |
| hfeng-pmm2 | SNP | * | func_cds | het | 99.8702 | 99.9731 | 99.7675 | 25.5047 | 11158 | 3 | 11155 | 26 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | func_cds | het | 99.9239 | 99.9731 | 99.8747 | 24.7221 | 11158 | 3 | 11158 | 14 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | func_cds | het | 99.8970 | 99.9642 | 99.8299 | 26.9739 | 11157 | 4 | 11154 | 19 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | func_cds | het | 97.1259 | 99.9642 | 94.4444 | 28.6508 | 11157 | 4 | 11033 | 649 | 1 | 0.1541 | |
| ckim-dragen | SNP | * | func_cds | het | 99.2748 | 99.9642 | 98.5949 | 34.9057 | 11157 | 4 | 11157 | 159 | 1 | 0.6289 | |
| ndellapenna-hhga | SNP | * | func_cds | het | 99.9060 | 99.9552 | 99.8568 | 24.2730 | 11156 | 5 | 11156 | 16 | 0 | 0.0000 | |
| jli-custom | SNP | * | func_cds | het | 99.8568 | 99.9552 | 99.7586 | 24.6835 | 11156 | 5 | 11156 | 27 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | func_cds | het | 99.9015 | 99.9552 | 99.8478 | 24.3993 | 11156 | 5 | 11153 | 17 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | func_cds | het | 99.9015 | 99.9462 | 99.8567 | 23.9755 | 11155 | 6 | 11152 | 16 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | func_cds | het | 99.5360 | 99.9462 | 99.1291 | 30.5670 | 11155 | 6 | 11155 | 98 | 1 | 1.0204 | |
| raldana-dualsentieon | SNP | * | func_cds | het | 99.8299 | 99.9462 | 99.7139 | 24.9799 | 11155 | 6 | 11152 | 32 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | func_cds | het | 99.9149 | 99.9462 | 99.8836 | 25.6262 | 11155 | 6 | 11152 | 13 | 3 | 23.0769 | |
| gduggal-bwafb | SNP | * | func_cds | het | 99.3985 | 99.9462 | 98.8568 | 33.7832 | 11155 | 6 | 11155 | 129 | 2 | 1.5504 | |
| gduggal-bwafb | SNP | * | map_l150_m1_e0 | homalt | 99.3896 | 98.9444 | 99.8389 | 72.9039 | 11154 | 119 | 11154 | 18 | 11 | 61.1111 | |
| rpoplin-dv42 | SNP | * | map_l150_m1_e0 | homalt | 99.3277 | 98.9444 | 99.7139 | 71.2907 | 11154 | 119 | 11154 | 32 | 31 | 96.8750 | |
| ckim-gatk | SNP | * | func_cds | het | 99.5225 | 99.9283 | 99.1199 | 36.5539 | 11153 | 8 | 11150 | 99 | 1 | 1.0101 | |
| jmaeng-gatk | SNP | * | func_cds | het | 99.1816 | 99.9283 | 98.4461 | 36.9727 | 11153 | 8 | 11150 | 176 | 1 | 0.5682 | |
| cchapple-custom | SNP | * | func_cds | het | 99.6697 | 99.9014 | 99.4391 | 30.1424 | 11150 | 11 | 11168 | 63 | 1 | 1.5873 | |
| ghariani-varprowl | SNP | * | func_cds | het | 99.3937 | 99.8746 | 98.9174 | 34.8349 | 11147 | 14 | 11147 | 122 | 2 | 1.6393 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.7368 | 98.6632 | 98.8105 | 55.8582 | 11145 | 151 | 11131 | 134 | 133 | 99.2537 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 56.8616 | 54.1076 | 59.9109 | 50.1524 | 11144 | 9452 | 11168 | 7473 | 5485 | 73.3976 | |
| ltrigg-rtg1 | SNP | * | func_cds | het | 99.4644 | 99.8387 | 99.0928 | 23.2229 | 11143 | 18 | 11142 | 102 | 1 | 0.9804 | |
| ltrigg-rtg2 | SNP | * | func_cds | het | 99.5132 | 99.8298 | 99.1986 | 22.7101 | 11142 | 19 | 11141 | 90 | 1 | 1.1111 | |
| qzeng-custom | SNP | * | func_cds | het | 99.6863 | 99.8118 | 99.5610 | 32.9992 | 11140 | 21 | 11112 | 49 | 1 | 2.0408 | |