PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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6101-6150 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5178 | 99.1170 | 99.9219 | 62.2385 | 11450 | 102 | 11509 | 9 | 8 | 88.8889 | |
| gduggal-bwaplat | SNP | tv | map_l100_m1_e0 | het | 84.9313 | 74.2687 | 99.1687 | 85.9377 | 11450 | 3967 | 11452 | 96 | 19 | 19.7917 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5046 | 99.0824 | 99.9304 | 64.6956 | 11446 | 106 | 11491 | 8 | 6 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5046 | 99.0824 | 99.9304 | 64.6956 | 11446 | 106 | 11491 | 8 | 6 | 75.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5044 | 99.0738 | 99.9389 | 63.8841 | 11445 | 107 | 11445 | 7 | 7 | 100.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5044 | 99.0738 | 99.9389 | 63.8841 | 11445 | 107 | 11445 | 7 | 7 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5260 | 99.0651 | 99.9913 | 63.9562 | 11444 | 108 | 11444 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5260 | 99.0651 | 99.9913 | 63.9562 | 11444 | 108 | 11444 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.6367 | 99.6517 | 93.7987 | 63.9277 | 11444 | 40 | 11435 | 756 | 746 | 98.6772 | |
| gduggal-snapvard | SNP | * | map_l150_m0_e0 | * | 88.5661 | 95.0964 | 82.8750 | 85.4707 | 11442 | 590 | 11300 | 2335 | 147 | 6.2955 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8684 | 99.6256 | 98.1226 | 58.6142 | 11441 | 43 | 11446 | 219 | 209 | 95.4338 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e1 | homalt | 99.8678 | 99.8342 | 99.9015 | 70.5782 | 11439 | 19 | 11154 | 11 | 6 | 54.5455 | |
| hfeng-pmm2 | SNP | ti | map_l125_m2_e1 | homalt | 99.8298 | 99.8254 | 99.8342 | 68.6316 | 11438 | 20 | 11438 | 19 | 9 | 47.3684 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e1 | homalt | 99.8210 | 99.7993 | 99.8428 | 68.5547 | 11435 | 23 | 11435 | 18 | 8 | 44.4444 | |
| hfeng-pmm1 | SNP | ti | map_l125_m2_e1 | homalt | 99.8210 | 99.7905 | 99.8515 | 68.6411 | 11434 | 24 | 11434 | 17 | 7 | 41.1765 | |
| bgallagher-sentieon | SNP | tv | map_l150_m2_e1 | * | 98.9952 | 99.3740 | 98.6193 | 77.4754 | 11430 | 72 | 11428 | 160 | 25 | 15.6250 | |
| gduggal-snapplat | SNP | ti | map_l150_m1_e0 | het | 92.8712 | 92.3848 | 93.3627 | 86.3201 | 11428 | 942 | 11450 | 814 | 456 | 56.0197 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e1 | * | 99.3954 | 99.3479 | 99.4429 | 75.5927 | 11427 | 75 | 11425 | 64 | 9 | 14.0625 | |
| egarrison-hhga | SNP | ti | map_l125_m2_e1 | homalt | 99.8253 | 99.7207 | 99.9300 | 68.7014 | 11426 | 32 | 11426 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | * | het | 98.3985 | 98.5594 | 98.2382 | 63.4201 | 11425 | 167 | 11375 | 204 | 176 | 86.2745 | |
| hfeng-pmm2 | SNP | tv | map_l150_m2_e1 | * | 99.1408 | 99.3306 | 98.9518 | 77.9286 | 11425 | 77 | 11423 | 121 | 14 | 11.5702 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7888 | 99.9038 | 97.6985 | 41.2693 | 11422 | 11 | 11419 | 269 | 2 | 0.7435 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.9297 | 98.8747 | 93.1551 | 69.8469 | 11422 | 130 | 11432 | 840 | 741 | 88.2143 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.9297 | 98.8747 | 93.1551 | 69.8469 | 11422 | 130 | 11432 | 840 | 741 | 88.2143 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.2813 | 99.4514 | 97.1385 | 53.8661 | 11421 | 63 | 11406 | 336 | 321 | 95.5357 | |
| cchapple-custom | SNP | * | map_l150_m2_e1 | homalt | 98.2494 | 96.5672 | 99.9912 | 69.1407 | 11421 | 406 | 11416 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9125 | 99.8688 | 97.9744 | 43.3648 | 11418 | 15 | 11415 | 236 | 2 | 0.8475 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.6516 | 99.8513 | 97.4804 | 41.9937 | 11416 | 17 | 11413 | 295 | 2 | 0.6780 | |
| ckim-gatk | INDEL | I1_5 | HG002compoundhet | * | 94.8213 | 92.3843 | 97.3904 | 66.1548 | 11415 | 941 | 11420 | 306 | 304 | 99.3464 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.8687 | 99.8426 | 99.8949 | 39.6597 | 11415 | 18 | 11408 | 12 | 3 | 25.0000 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e1 | homalt | 99.7684 | 99.6160 | 99.9212 | 64.9891 | 11414 | 44 | 11414 | 9 | 8 | 88.8889 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6905 | 99.8338 | 99.5476 | 42.3216 | 11414 | 19 | 11441 | 52 | 4 | 7.6923 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | homalt | 99.7553 | 99.6160 | 99.8950 | 68.0185 | 11414 | 44 | 11415 | 12 | 12 | 100.0000 | |
| gduggal-bwavard | SNP | * | map_l150_m2_e0 | homalt | 98.6803 | 97.5639 | 99.8226 | 73.2845 | 11414 | 285 | 11251 | 20 | 15 | 75.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 62.4312 | 62.4952 | 62.3673 | 38.8416 | 11411 | 6848 | 16160 | 9751 | 8900 | 91.2727 | |
| jli-custom | SNP | ti | map_l125_m2_e1 | homalt | 99.7552 | 99.5811 | 99.9299 | 65.1529 | 11410 | 48 | 11410 | 8 | 8 | 100.0000 | |
| jlack-gatk | SNP | * | map_l100_m0_e0 | homalt | 98.9979 | 98.1928 | 99.8163 | 60.9544 | 11410 | 210 | 11410 | 21 | 16 | 76.1905 | |
| bgallagher-sentieon | SNP | ti | map_l125_m2_e1 | homalt | 99.7377 | 99.5724 | 99.9037 | 65.6841 | 11409 | 49 | 11409 | 11 | 9 | 81.8182 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.3331 | 99.7813 | 95.0021 | 46.2479 | 11408 | 25 | 11405 | 600 | 4 | 0.6667 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | het | 78.9799 | 73.9962 | 84.6833 | 75.5859 | 11408 | 4009 | 11406 | 2063 | 73 | 3.5385 | |
| ndellapenna-hhga | SNP | ti | map_l125_m2_e1 | homalt | 99.7508 | 99.5636 | 99.9387 | 67.6903 | 11408 | 50 | 11408 | 7 | 7 | 100.0000 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.2339 | 99.3295 | 95.2250 | 57.6340 | 11407 | 77 | 11407 | 572 | 562 | 98.2517 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0835 | 99.3208 | 98.8474 | 56.8151 | 11406 | 78 | 11406 | 133 | 125 | 93.9850 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e1 | homalt | 99.7464 | 99.5462 | 99.9474 | 65.8140 | 11406 | 52 | 11407 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0489 | 99.3034 | 98.7958 | 56.9516 | 11404 | 80 | 11404 | 139 | 132 | 94.9640 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8341 | 99.7463 | 97.9383 | 44.8790 | 11404 | 29 | 11401 | 240 | 3 | 1.2500 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.6015 | 99.7463 | 97.4826 | 44.5639 | 11404 | 29 | 11462 | 296 | 9 | 3.0405 | |
| jpowers-varprowl | SNP | * | map_l100_m0_e0 | homalt | 98.9071 | 98.1325 | 99.6940 | 66.9212 | 11403 | 217 | 11403 | 35 | 22 | 62.8571 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e1 | * | 99.0574 | 99.1393 | 98.9756 | 78.7166 | 11403 | 99 | 11401 | 118 | 24 | 20.3390 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.0585 | 99.7289 | 92.6487 | 50.1527 | 11402 | 31 | 10889 | 864 | 45 | 5.2083 | |