PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
6001-6050 / 86044 show all
hfeng-pmm1SNP*map_l100_m0_e0homalt
99.7374
99.7074
99.7675
63.8562
1158634115862710
37.0370
hfeng-pmm3SNP*map_l100_m0_e0homalt
99.7288
99.6902
99.7675
63.7304
1158436115842710
37.0370
rpoplin-dv42SNP*map_l150_m2_e0homalt
99.3437
98.9743
99.7158
73.6127
11579120115793332
96.9697
gduggal-bwafbSNP*map_l150_m2_e0homalt
99.4033
98.9657
99.8448
74.8531
11578121115781811
61.1111
egarrison-hhgaSNP*map_l100_m0_e0homalt
99.7759
99.6299
99.9223
61.7548
11577431157798
88.8889
ltrigg-rtg1SNP*map_l100_m0_e0homalt
99.7372
99.6299
99.8447
62.2918
1157743115751815
83.3333
bgallagher-sentieonINDELI1_5HG002compoundhet*
95.0768
93.6792
96.5167
65.8897
1157578111582418416
99.5215
ltrigg-rtg2SNP*map_l100_m0_e0homalt
99.7457
99.5611
99.9309
58.9350
11569511156786
75.0000
rpoplin-dv42INDELI1_5HG002compoundhet*
95.3045
93.6144
97.0566
64.5995
1156778911574351345
98.2906
raldana-dualsentieonSNP*map_l100_m0_e0homalt
99.7198
99.5353
99.9050
58.6521
115665411566118
72.7273
ckim-gatkINDELD1_5HG002compoundhet*
95.9834
94.5321
97.4800
66.2715
1156666911566299296
98.9967
asubramanian-gatkINDELI1_5HG002compoundhet*
95.2373
93.5902
96.9436
67.0365
1156479211577365350
95.8904
astatham-gatkSNP*map_l150_m2_e0homalt
99.3470
98.8375
99.8618
70.8404
11563136115631613
81.2500
ckim-vqsrINDELD1_5HG002compoundhet*
95.9661
94.4994
97.4791
66.2791
1156267311562299296
98.9967
anovak-vgSNPtimap_l150_m2_e0het
75.9641
89.7213
65.8649
81.6317
1155713241147359461327
22.3175
ndellapenna-hhgaSNP*map_l100_m0_e0homalt
99.6765
99.4406
99.9135
60.1441
115556511555108
80.0000
bgallagher-sentieonSNP*map_l100_m0_e0homalt
99.6507
99.4320
99.8703
60.0283
1155466115541511
73.3333
asubramanian-gatkINDELD1_5HG002compoundhet*
95.6905
94.4340
96.9809
66.6013
1155468111564360339
94.1667
jli-customSNP*map_l100_m0_e0homalt
99.6679
99.4234
99.9135
58.5496
1155367115531010
100.0000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
61.2290
64.8241
58.0117
44.0961
115516268209371515411698
77.1941
ckim-dragenINDELI1_5HG002compoundhet*
94.8982
93.4283
96.4151
65.5477
1154481211538429425
99.0676
gduggal-bwavardSNP*map_l150_m2_e1homalt
98.6774
97.5564
99.8244
73.3124
11538289113702015
75.0000
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.9134
99.8615
99.9653
69.5900
11536161153643
75.0000
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.9134
99.8615
99.9653
69.5900
11536161153643
75.0000
ckim-gatkINDELD6_15*het
98.7882
99.4997
98.0868
64.1200
115345811484224173
77.2321
ckim-dragenINDELD6_15*het
99.2490
99.4651
99.0338
63.3339
11530621148011267
59.8214
ckim-dragenSNP*map_l100_m0_e0homalt
99.4909
99.2169
99.7664
57.4442
1152991115322724
88.8889
dgrover-gatkINDELD6_15*het
98.8856
99.4565
98.3212
62.9800
115296311479196167
85.2041
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8787
99.7922
99.9653
69.1476
11528241152842
50.0000
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8787
99.7922
99.9653
69.1476
11528241152842
50.0000
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8700
99.7836
99.9566
69.9578
11527251152753
60.0000
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8700
99.7836
99.9566
69.9578
11527251152753
60.0000
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
89.8585
83.7475
96.9315
44.2062
11527223730019594
98.9474
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
77.4599
71.6987
84.2278
56.4520
1152745502131339913815
95.5901
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
77.4599
71.6987
84.2278
56.4520
1152745502131339913815
95.5901
bgallagher-sentieonINDELD6_15*het
98.7535
99.4306
98.0855
62.6961
115266611476224188
83.9286
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
90.7040
83.7402
98.9310
28.6610
11526223811938129114
88.3721
ltrigg-rtg2SNP*map_l150_m0_e0*
97.7647
95.7862
99.8267
65.0696
1152550711521204
20.0000
jmaeng-gatkINDELD1_5HG002compoundhet*
95.7461
94.1888
97.3557
66.4684
1152471111524313309
98.7220
dgrover-gatkSNP*map_l100_m0_e0homalt
99.5293
99.1738
99.8873
60.6890
115249611524139
69.2308
astatham-gatkINDELD6_15*het
98.7915
99.4048
98.1857
62.8008
115236911473212175
82.5472
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8440
99.7316
99.9566
64.4687
11521311152154
80.0000
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8440
99.7316
99.9566
64.4687
11521311152154
80.0000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8483
99.7230
99.9740
62.7618
11520321152033
100.0000
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8483
99.7230
99.9740
62.7618
11520321152033
100.0000
ckim-vqsrINDELD6_15*het
98.8252
99.3703
98.2861
64.1967
115197311469200170
85.0000
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
82.0910
79.0543
85.3704
89.9548
115193052115601981144
7.2691
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
82.0910
79.0543
85.3704
89.9548
115193052115601981144
7.2691
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8049
99.6537
99.9566
69.9831
11512401151452
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8049
99.6537
99.9566
69.9831
11512401151452
40.0000