PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5701-5750 / 86044 show all | |||||||||||||||
| ckim-vqsr | SNP | ti | map_l125_m1_e0 | het | 81.0388 | 68.6740 | 98.8337 | 87.9988 | 12544 | 5722 | 12542 | 148 | 2 | 1.3514 | |
| dgrover-gatk | SNP | * | map_l125_m0_e0 | het | 98.7051 | 99.0287 | 98.3836 | 80.4812 | 12541 | 123 | 12538 | 206 | 40 | 19.4175 | |
| hfeng-pmm2 | SNP | * | map_l125_m0_e0 | het | 98.6818 | 99.0287 | 98.3373 | 78.8543 | 12541 | 123 | 12538 | 212 | 20 | 9.4340 | |
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | * | 72.8908 | 57.5582 | 99.3581 | 86.0136 | 12531 | 9240 | 12537 | 81 | 26 | 32.0988 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e0 | het | 98.4904 | 97.2440 | 99.7691 | 66.6179 | 12526 | 355 | 12529 | 29 | 5 | 17.2414 | |
| jpowers-varprowl | INDEL | I6_15 | * | * | 57.4140 | 50.4492 | 66.6100 | 47.5997 | 12523 | 12300 | 12542 | 6287 | 6247 | 99.3638 | |
| ghariani-varprowl | SNP | ti | map_l125_m0_e0 | * | 97.4197 | 98.0724 | 96.7757 | 78.9680 | 12516 | 246 | 12516 | 417 | 104 | 24.9400 | |
| ndellapenna-hhga | SNP | ti | map_l125_m0_e0 | * | 98.8454 | 97.9392 | 99.7685 | 71.9216 | 12499 | 263 | 12499 | 29 | 16 | 55.1724 | |
| hfeng-pmm1 | SNP | * | map_l125_m0_e0 | het | 98.9783 | 98.6892 | 99.2691 | 75.8999 | 12498 | 166 | 12495 | 92 | 24 | 26.0870 | |
| jlack-gatk | SNP | * | map_l125_m0_e0 | het | 92.5432 | 98.6576 | 87.1425 | 85.9677 | 12494 | 170 | 12491 | 1843 | 134 | 7.2708 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | het | 98.6495 | 98.6418 | 98.6571 | 74.4583 | 12492 | 172 | 12489 | 170 | 97 | 57.0588 | |
| gduggal-bwaplat | SNP | * | HG002compoundhet | het | 83.0864 | 88.0801 | 78.6286 | 53.0695 | 12488 | 1690 | 12671 | 3444 | 265 | 7.6945 | |
| mlin-fermikit | SNP | * | map_l125_m1_e0 | het | 60.7541 | 43.9737 | 98.2445 | 60.8741 | 12485 | 15907 | 12480 | 223 | 8 | 3.5874 | |
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | het | 96.3272 | 98.5786 | 94.1762 | 82.3918 | 12484 | 180 | 12484 | 772 | 162 | 20.9845 | |
| cchapple-custom | SNP | ti | map_l150_m2_e0 | het | 96.0807 | 96.8481 | 95.3254 | 81.6490 | 12475 | 406 | 12480 | 612 | 162 | 26.4706 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e1 | het | 96.4360 | 95.8433 | 97.0362 | 82.0973 | 12474 | 541 | 12474 | 381 | 131 | 34.3832 | |
| ckim-dragen | SNP | * | map_l125_m0_e0 | het | 97.3570 | 98.4523 | 96.2857 | 80.0772 | 12468 | 196 | 12469 | 481 | 37 | 7.6923 | |
| raldana-dualsentieon | SNP | * | map_l125_m0_e0 | het | 98.3431 | 98.4365 | 98.2499 | 76.1833 | 12466 | 198 | 12463 | 222 | 2 | 0.9009 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 72.2778 | 90.5780 | 60.1295 | 57.9997 | 12459 | 1296 | 27033 | 17925 | 14535 | 81.0879 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 72.2778 | 90.5780 | 60.1295 | 57.9997 | 12459 | 1296 | 27033 | 17925 | 14535 | 81.0879 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | het | 95.8374 | 96.6850 | 95.0046 | 76.3778 | 12454 | 427 | 12457 | 655 | 335 | 51.1450 | |
| qzeng-custom | SNP | tv | map_l100_m1_e0 | het | 88.3933 | 80.7745 | 97.5991 | 81.8251 | 12453 | 2964 | 12439 | 306 | 244 | 79.7386 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m2_e0 | het | 98.2167 | 96.6307 | 99.8556 | 61.9797 | 12447 | 434 | 12450 | 18 | 1 | 5.5556 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7777 | 99.3930 | 98.1700 | 65.9733 | 12445 | 76 | 12285 | 229 | 215 | 93.8865 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m0_e0 | * | 98.6208 | 97.4926 | 99.7755 | 64.1831 | 12442 | 320 | 12442 | 28 | 12 | 42.8571 | |
| gduggal-bwafb | SNP | * | map_l125_m0_e0 | het | 98.0108 | 98.2391 | 97.7835 | 78.4484 | 12441 | 223 | 12441 | 282 | 70 | 24.8227 | |
| qzeng-custom | SNP | tv | map_l125_m2_e0 | * | 85.0368 | 75.4382 | 97.4343 | 83.5735 | 12439 | 4050 | 12418 | 327 | 274 | 83.7920 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7180 | 99.3371 | 98.1066 | 65.6768 | 12438 | 83 | 12280 | 237 | 222 | 93.6709 | |
| egarrison-hhga | SNP | * | map_l125_m0_e0 | het | 98.9341 | 98.2154 | 99.6635 | 75.5931 | 12438 | 226 | 12438 | 42 | 17 | 40.4762 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7577 | 99.3291 | 98.1927 | 66.2045 | 12437 | 84 | 12279 | 226 | 215 | 95.1327 | |
| gduggal-bwavard | INDEL | I1_5 | HG002complexvar | homalt | 96.0632 | 92.4747 | 99.9414 | 32.6716 | 12436 | 1012 | 11931 | 7 | 5 | 71.4286 | |
| gduggal-snapvard | SNP | ti | map_l150_m2_e0 | het | 90.0316 | 96.5142 | 84.3650 | 84.9671 | 12432 | 449 | 12335 | 2286 | 171 | 7.4803 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.6266 | 99.2892 | 97.9729 | 65.4849 | 12432 | 89 | 12276 | 254 | 243 | 95.6693 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7214 | 99.2652 | 98.1834 | 66.0056 | 12429 | 92 | 12269 | 227 | 213 | 93.8326 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2927 | 99.2413 | 99.3442 | 65.4836 | 12426 | 95 | 12270 | 81 | 75 | 92.5926 | |
| ciseli-custom | SNP | tv | map_l125_m2_e1 | * | 79.4183 | 74.5632 | 84.9497 | 78.4301 | 12420 | 4237 | 12412 | 2199 | 540 | 24.5566 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | * | 94.2056 | 97.3045 | 91.2979 | 82.1654 | 12418 | 344 | 12317 | 1174 | 66 | 5.6218 | |
| jli-custom | SNP | * | map_l125_m0_e0 | het | 98.5516 | 98.0575 | 99.0508 | 71.6081 | 12418 | 246 | 12418 | 119 | 39 | 32.7731 | |
| ckim-isaac | SNP | ti | map_l125_m2_e1 | het | 78.6508 | 64.9290 | 99.7264 | 75.0040 | 12393 | 6694 | 12393 | 34 | 3 | 8.8235 | |
| gduggal-snapplat | SNP | * | HG002compoundhet | het | 76.3438 | 87.3819 | 67.7816 | 62.0964 | 12389 | 1789 | 12564 | 5972 | 438 | 7.3342 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4732 | 98.9378 | 98.0130 | 65.7049 | 12388 | 133 | 12233 | 248 | 237 | 95.5645 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | het | 91.2008 | 97.7811 | 85.4502 | 85.0594 | 12383 | 281 | 12251 | 2086 | 87 | 4.1707 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.4087 | 70.0526 | 97.1590 | 70.4588 | 12379 | 5292 | 12380 | 362 | 254 | 70.1657 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.4087 | 70.0526 | 97.1590 | 70.4588 | 12379 | 5292 | 12380 | 362 | 254 | 70.1657 | |
| ckim-vqsr | SNP | * | map_l150_m1_e0 | het | 77.5773 | 64.0246 | 98.4082 | 91.2212 | 12367 | 6949 | 12364 | 200 | 1 | 0.5000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | * | 98.3571 | 96.8735 | 99.8869 | 59.3116 | 12363 | 399 | 12363 | 14 | 4 | 28.5714 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7616 | 98.6343 | 98.8892 | 60.8084 | 12350 | 171 | 12197 | 137 | 115 | 83.9416 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.5231 | 98.6023 | 94.5298 | 62.0425 | 12346 | 175 | 12304 | 712 | 693 | 97.3315 | |
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | het | 96.4300 | 95.8311 | 97.0364 | 82.0218 | 12344 | 537 | 12344 | 377 | 130 | 34.4828 | |
| jmaeng-gatk | SNP | tv | map_l125_m2_e1 | * | 84.0047 | 74.0950 | 96.9745 | 86.2788 | 12342 | 4315 | 12340 | 385 | 14 | 3.6364 | |