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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
5551-5600 / 86044 show all
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
80.0676
74.4893
86.5491
57.6750
1316345081334520741774
85.5352
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1286
95.4588
98.8579
46.1719
1315962613157152147
96.7105
ciseli-customSNPtimap_l125_m1_e0het
77.4977
72.0300
83.8636
79.8833
13157510913154253172
2.8447
gduggal-bwafbINDELI1_5HG002complexvarhomalt
98.3809
97.8212
98.9471
49.0711
1315529313156140134
95.7143
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.7231
93.7001
99.9475
34.6971
131488841333776
85.7143
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.1389
95.5295
98.8034
63.4805
131426151312915934
21.3836
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.1389
95.5295
98.8034
63.4805
131426151312915934
21.3836
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.6962
93.6431
99.9550
34.4875
131408921333365
83.3333
cchapple-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
93.6075
0.0000
0.0000
13135897000
hfeng-pmm2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.9900
95.2557
98.7886
47.4309
1313165413129161155
96.2733
rpoplin-dv42INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.9540
95.2267
96.6924
48.5132
1312765813126449442
98.4410
ckim-gatkSNPtimap_l100_m1_e0homalt
84.4316
73.0902
99.9391
65.0795
1312748331312787
87.5000
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
80.0812
74.2799
86.8654
57.3222
1312645451326020051766
88.0798
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
80.0812
74.2799
86.8654
57.3222
1312645451326020051766
88.0798
hfeng-pmm3SNP*HG002compoundhethet
96.0659
92.5730
99.8327
43.9121
13125105313125225
22.7273
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.9360
95.1324
98.8093
46.5673
1311467113112158151
95.5696
hfeng-pmm1SNP*HG002compoundhethet
96.0618
92.4743
99.9390
43.1383
1311110671311084
50.0000
raldana-dualsentieonSNP*HG002compoundhethet
95.9874
92.3755
99.8932
43.8424
13097108113096147
50.0000
jpowers-varprowlSNP*HG002compoundhethet
94.4520
92.3614
96.6395
53.1760
1309510831328646240
8.6580
ckim-isaacINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
91.1346
84.9322
98.3142
43.5277
13094232313472231203
87.8788
gduggal-bwaplatSNP*map_l100_m0_e0het
76.0794
61.7119
99.1672
89.0304
1308681191309811034
30.9091
hfeng-pmm2SNP*HG002compoundhethet
95.9129
92.2768
99.8474
42.7742
13083109513083203
15.0000
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
71.9133
95.0643
57.8299
64.8667
130786791296294528806
93.1655
gduggal-bwavardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
71.9133
95.0643
57.8299
64.8667
130786791296294528806
93.1655
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.4523
93.1870
99.9548
33.8499
130769561326965
83.3333
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.2310
94.8350
97.6687
49.0598
1307371213071312308
98.7179
ckim-vqsrSNPtimap_l125_m2_e0het
81.4281
69.2308
98.8426
88.6749
130685808130661533
1.9608
ckim-vqsrSNP*map_l150_m2_e0het
78.1444
64.8041
98.4007
91.6936
130477086130442122
0.9434
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.0877
94.7254
99.5709
28.2155
13038726132265756
98.2456
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.1489
92.9019
99.6311
33.4986
13036996132324948
97.9592
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.1413
92.8877
99.6311
33.7242
13034998132344949
100.0000
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0483
92.8307
99.4969
46.1918
130261006132506766
98.5075
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0921
92.8093
99.6158
30.7146
130231009132225151
100.0000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0845
92.7950
99.6157
30.7178
130211011132205151
100.0000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
87.2372
87.9811
86.5058
47.3544
1300817771419322141144
51.6712
eyeh-varpipeINDELI1_5HG002complexvarhomalt
96.6684
96.6984
96.6384
45.8931
1300444412649440434
98.6364
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.5812
92.6383
98.7173
34.2439
12999103313853180164
91.1111
eyeh-varpipeINDEL*HG002compoundhet*
44.6205
43.3845
45.9289
60.1662
1299816962128161508814950
99.0854
gduggal-bwaplatSNPtimap_l125_m2_e1het
80.7395
68.0935
99.1541
88.7617
1299760901301111131
27.9279
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.9211
94.3694
99.6146
31.5700
12989775131825150
98.0392
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_11to50het
86.5531
82.3858
91.1644
45.8288
129842776215542089859
41.1202
jlack-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.9671
94.1821
95.7654
49.5027
1298380212981574528
91.9861
mlin-fermikitINDELI1_5HG002complexvarhomalt
96.8973
96.5125
97.2853
48.2881
1297946912901360351
97.5000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.0480
87.7443
94.6101
39.6686
12973181212884734647
88.1471
qzeng-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9981
84.0955
99.1351
58.5016
12965245245854031
77.5000
gduggal-snapplatSNPtimap_l100_m0_e0het
93.3645
92.7197
94.0184
82.6234
12965101812983826467
56.5375
mlin-fermikitSNP*map_l150_m1_e0*
56.5558
42.3405
85.1406
61.3631
12960176491295522611991
88.0584
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.8059
94.1587
99.6062
31.3760
12960804131545251
98.0769
anovak-vgINDELI1_5HG002complexvarhomalt
67.3378
96.3340
51.7586
45.0635
12955493131561226211858
96.7053
eyeh-varpipeSNPtimap_l150_m2_e1het
98.7627
99.5083
98.0281
80.5176
12951641267725511
4.3137