PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
5351-5400 / 86044 show all
hfeng-pmm3SNPtifunc_cds*
99.9347
99.9637
99.9057
21.9632
13782513780130
0.0000
hfeng-pmm1SNPtifunc_cds*
99.9384
99.9637
99.9130
21.7209
13782513780120
0.0000
eyeh-varpipeSNPtifunc_cds*
99.2850
99.9637
98.6154
24.7463
137825136751921
0.5208
ckim-dragenSNPtifunc_cds*
99.6097
99.9637
99.2582
28.1352
137825137821031
0.9709
egarrison-hhgaSNPtifunc_cds*
99.9456
99.9637
99.9275
22.3817
13782513782100
0.0000
gduggal-snapfbSNPtifunc_cds*
99.7900
99.9637
99.6169
26.0872
13782513782532
3.7736
jlack-gatkSNPtifunc_cds*
99.4443
99.9565
98.9373
29.0994
137816137791481
0.6757
raldana-dualsentieonSNPtifunc_cds*
99.8985
99.9565
99.8406
21.8782
13781613779220
0.0000
dgrover-gatkSNPtifunc_cds*
99.9347
99.9565
99.9130
23.1014
13781613779120
0.0000
bgallagher-sentieonSNPtifunc_cds*
99.9094
99.9565
99.8623
22.5049
13781613779190
0.0000
ndellapenna-hhgaSNPtifunc_cds*
99.9384
99.9565
99.9202
22.0527
13781613781110
0.0000
jli-customSNPtifunc_cds*
99.9166
99.9492
99.8840
21.7559
13780713780160
0.0000
gduggal-bwafbSNPtifunc_cds*
99.6673
99.9492
99.3869
27.6810
13780713780852
2.3529
rpoplin-dv42SNPtifunc_cds*
99.9420
99.9492
99.9347
23.0636
1378071377892
22.2222
cchapple-customSNPtifunc_cds*
99.8586
99.9202
99.7971
24.6780
137761113774281
3.5714
egarrison-hhgaSNPtimap_l100_m0_e0het
99.1363
98.4982
99.7827
69.5619
13773210137743014
46.6667
ltrigg-rtg1SNPtifunc_cds*
99.7465
99.8912
99.6022
21.3270
137721513771551
1.8182
jmaeng-gatkSNPtifunc_cds*
99.5302
99.8912
99.1718
29.3312
1377215137701151
0.8696
ckim-gatkSNPtifunc_cds*
99.6887
99.8912
99.4870
29.0714
137721513770711
1.4085
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
72.5476
77.2827
68.3592
65.9014
1377140481466167863680
54.2293
qzeng-customSNPtimap_l125_m2_e0het
83.1453
72.9498
96.6538
86.6306
13770510613720475387
81.4737
anovak-vgSNP*map_l125_m1_e0homalt
89.5021
81.4552
99.3132
65.1171
137703135135939478
82.9787
qzeng-customSNPtifunc_cds*
99.7894
99.8622
99.7168
26.7032
137681913732394
10.2564
ltrigg-rtg2SNPtifunc_cds*
99.7392
99.8622
99.6165
20.8703
137681913767531
1.8868
ghariani-varprowlSNPtifunc_cds*
99.6201
99.8549
99.3864
28.0976
137672013767859
10.5882
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
59.0686
94.1575
43.0321
53.7351
13763854138401832218101
98.7938
ciseli-customSNP*map_l150_m2_e1het
73.3676
67.5883
80.2276
84.7439
137636600137473388114
3.3648
gduggal-snapfbSNP*HG002compoundhethet
75.1230
97.0518
61.2774
50.8228
13760418140278864298
3.3619
astatham-gatkSNPtifunc_cds*
99.8730
99.7897
99.9564
22.5679
13758291375660
0.0000
ckim-vqsrSNPtifunc_cds*
99.7642
99.7244
99.8040
29.1716
137493813747270
0.0000
gduggal-bwavardINDELI6_15**
60.2022
55.3881
65.9327
50.0878
13749110741368570716805
96.2382
ghariani-varprowlINDELI6_15**
61.1674
55.3640
68.3299
52.2203
13743110801376363796287
98.5578
jmaeng-gatkSNPtvmap_l100_m2_e0het
91.4492
87.0444
96.3236
84.5266
1373320441372952414
2.6718
asubramanian-gatkSNPtifunc_cds*
99.6805
99.5721
99.7892
27.6472
137285913726291
3.4483
jpowers-varprowlSNPtifunc_cds*
99.5285
99.5285
99.5285
26.5751
137226513722659
13.8462
ckim-gatkSNPtvmap_l100_m2_e0het
91.4895
86.9494
96.5299
84.2447
1371820591371449316
3.2454
ciseli-customSNPtifunc_cds*
98.7839
99.4488
98.1278
24.0438
13711761368026131
11.8774
gduggal-snapplatSNPtifunc_cds*
99.5243
99.4052
99.6437
28.8978
137058213705495
10.2041
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
90.2475
83.3770
98.3520
63.7948
1369827311372623021
9.1304
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
61.1245
61.5551
60.6998
48.1943
136968554199661292711157
86.3077
asubramanian-gatkSNP*map_l125_m1_e0*
46.3852
30.2138
99.8032
91.3119
136953163213692276
22.2222
mlin-fermikitSNPtifunc_cds*
99.5022
99.3109
99.6942
17.8687
1369295136924234
80.9524
ndellapenna-hhgaSNP*HG002compoundhethet
98.0271
96.5510
99.5491
42.9549
13689489136876236
58.0645
asubramanian-gatkSNP*HG002compoundhethet
97.7049
96.5369
98.9015
46.6042
136874911368515223
15.1316
gduggal-bwaplatSNPtifunc_cds*
99.4984
99.2747
99.7231
31.1374
1368710013687384
10.5263
jmaeng-gatkSNPtimap_l100_m2_e1homalt
84.9915
73.9321
99.9415
66.3568
1367348211367387
87.5000
ciseli-customSNPtimap_l125_m2_e0het
77.8322
72.4359
84.0972
81.0572
13673520313670258572
2.7853
gduggal-snapvardSNPtifunc_cds*
99.4321
99.1151
99.7511
27.3375
13665122136283414
41.1765
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
71.4050
68.7947
74.2213
55.0266
1366461981365347424639
97.8279
gduggal-bwavardSNPtifunc_cds*
99.3703
99.0716
99.6707
28.1478
13659128136224515
33.3333