PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53351-53400 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.5763 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8605 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.5726 | 1 | 1 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 48.0000 | 100.0000 | 31.5789 | 90.0000 | 1 | 0 | 12 | 26 | 5 | 19.2308 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 40.0000 | 100.0000 | 25.0000 | 95.4545 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 35.5556 | 100.0000 | 21.6216 | 96.1973 | 1 | 0 | 24 | 87 | 22 | 25.2874 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 72.0000 | 100.0000 | 56.2500 | 97.9408 | 1 | 0 | 9 | 7 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.6667 | 100.0000 | 50.0000 | 99.1701 | 1 | 0 | 2 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 80.0000 | 100.0000 | 66.6667 | 96.5909 | 1 | 0 | 2 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 98.4375 | 1 | 3 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 98.3051 | 1 | 3 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 8.3333 | 0.0000 | 0.0000 | 1 | 11 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 11.1111 | 0.0000 | 0.0000 | 1 | 8 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 1.9608 | 0.0000 | 0.0000 | 1 | 50 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 33.3333 | 25.0000 | 50.0000 | 98.3740 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 98.4848 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 98.6842 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 96.7213 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 98.7342 | 1 | 2 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 66.6667 | 100.0000 | 50.0000 | 96.7742 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 3.2258 | 0.0000 | 0.0000 | 1 | 30 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9488 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 2.0408 | 0.0000 | 0.0000 | 1 | 48 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 1 | 12 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 12.5000 | 0.0000 | 0.0000 | 1 | 7 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9948 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9928 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 3.0303 | 0.0000 | 0.0000 | 1 | 32 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 5.2632 | 0.0000 | 0.0000 | 1 | 18 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 5.2632 | 0.0000 | 0.0000 | 1 | 18 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 5.0000 | 0.0000 | 0.0000 | 1 | 19 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l250_m0_e0 | het | 25.0000 | 25.0000 | 25.0000 | 98.6486 | 1 | 3 | 1 | 3 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.0477 | 0.0000 | 0.0000 | 1 | 2097 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.2985 | 0.0000 | 0.0000 | 1 | 334 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0478 | 0.0000 | 0.0000 | 1 | 2092 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | HG002compoundhet | homalt | 0.9434 | 33.3333 | 0.4785 | 52.5000 | 1 | 2 | 2 | 416 | 387 | 93.0288 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 14.2857 | 100.0000 | 7.6923 | 87.1287 | 1 | 0 | 1 | 12 | 10 | 83.3333 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 12.1212 | 6.6667 | 66.6667 | 89.2857 | 1 | 14 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 11.1111 | 6.2500 | 50.0000 | 90.4762 | 1 | 15 | 1 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 6.6667 | 3.8462 | 25.0000 | 96.4602 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 25.0000 | 20.0000 | 33.3333 | 90.3226 | 1 | 4 | 1 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 6.6667 | 3.8462 | 25.0000 | 97.0149 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 25.0000 | 20.0000 | 33.3333 | 91.4286 | 1 | 4 | 1 | 2 | 1 | 50.0000 | |