PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53051-53100 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| dgrover-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8428 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8377 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8750 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.8750 | 1 | 1 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 97.4576 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 96.7033 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.7500 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.3871 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6429 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9383 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.1481 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9992 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9921 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9944 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9916 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9120 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1379 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0392 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.6667 | 1 | 1 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 100.0000 | 33.3333 | 95.2381 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 77.7778 | 1 | 1 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.5075 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 1 | 1 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.3077 | 1 | 1 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.3077 | 1 | 1 | 1 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.8593 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.4252 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.9209 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.5185 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 50.0000 | 100.0000 | 33.3333 | 98.9474 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |