PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52501-52550 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.9231 | 1 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.1132 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 95.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.8571 | 1 | 1 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8503 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9964 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9938 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | * | hetalt | 99.4614 | 100.0000 | 98.9286 | 95.9296 | 1 | 0 | 277 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | HG002compoundhet | * | 100.0000 | 100.0000 | 100.0000 | 93.2181 | 1 | 0 | 153 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | HG002compoundhet | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.9151 | 1 | 0 | 131 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.7778 | 100.0000 | 95.6522 | 99.1301 | 1 | 0 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 94.7368 | 100.0000 | 90.0000 | 99.2424 | 1 | 0 | 9 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 94.3633 | 1 | 0 | 27 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 95.9596 | 1 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 95.1891 | 1 | 0 | 173 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 94.4528 | 1 | 0 | 74 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9964 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9933 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | * | hetalt | 99.4371 | 100.0000 | 98.8806 | 95.8674 | 1 | 0 | 265 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | HG002compoundhet | * | 100.0000 | 100.0000 | 100.0000 | 93.1966 | 1 | 0 | 146 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | HG002compoundhet | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7545 | 1 | 0 | 126 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.7778 | 100.0000 | 95.6522 | 99.1174 | 1 | 0 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 94.7368 | 100.0000 | 90.0000 | 99.2260 | 1 | 0 | 9 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 94.3750 | 1 | 0 | 27 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 100.0000 | 100.0000 | 100.0000 | 95.9391 | 1 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 95.3073 | 1 | 0 | 168 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 94.4147 | 1 | 0 | 73 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.6364 | 1 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 1 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||