PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52351-52400 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.9697 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 97.0588 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_siren | hetalt | 0.0000 | 1.3889 | 0.0000 | 0.0000 | 1 | 71 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | segdup | hetalt | 0.0000 | 2.2222 | 0.0000 | 0.0000 | 1 | 44 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.0000 | 100.0000 | 33.3333 | 97.3684 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 100.0000 | 50.0000 | 97.8261 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8384 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 50.0000 | 100.0000 | 98.6486 | 1 | 1 | 1 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9531 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 40.0000 | 33.3333 | 50.0000 | 99.4652 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 99.3377 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7183 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7455 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7500 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9965 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9952 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 10.0000 | 5.2632 | 100.0000 | 98.9583 | 1 | 18 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m0_e0 | * | 16.6667 | 100.0000 | 1 | 5 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m0_e0 | homalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | het | 16.6667 | 9.0909 | 100.0000 | 99.5495 | 1 | 10 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | * | 10.5263 | 5.8824 | 50.0000 | 85.7143 | 1 | 16 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | tech_badpromoters | het | 18.1818 | 10.0000 | 100.0000 | 88.8889 | 1 | 9 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | * | * | 0.0000 | 0.0157 | 0.0000 | 0.0000 | 1 | 6376 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.0477 | 0.0000 | 0.0000 | 1 | 2097 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | HG002compoundhet | * | 0.0000 | 0.0467 | 0.0000 | 0.0000 | 1 | 2142 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0478 | 0.0000 | 0.0000 | 1 | 2092 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | func_cds | hetalt | 40.0000 | 25.0000 | 100.0000 | 0.0000 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 7.1429 | 4.1667 | 25.0000 | 86.6667 | 1 | 23 | 1 | 3 | 2 | 66.6667 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 14.2857 | 7.6923 | 100.0000 | 80.0000 | 1 | 12 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 15.3846 | 8.3333 | 100.0000 | 50.0000 | 1 | 11 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.2222 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.4026 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.5309 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | het | 10.5263 | 6.6667 | 25.0000 | 96.8992 | 1 | 14 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | homalt | 25.0000 | 14.2857 | 100.0000 | 98.4127 | 1 | 6 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | het | 10.5263 | 6.6667 | 25.0000 | 97.2973 | 1 | 14 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | homalt | 25.0000 | 14.2857 | 100.0000 | 98.5075 | 1 | 6 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e1 | het | 10.0000 | 6.2500 | 25.0000 | 97.4026 | 1 | 15 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e1 | homalt | 22.2222 | 12.5000 | 100.0000 | 98.5915 | 1 | 7 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 83.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 50.0000 | 60.0000 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 33.3333 | 50.0000 | 98.1982 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | map_l250_m2_e1 | hetalt | 33.3333 | 20.0000 | 100.0000 | 98.8636 | 1 | 4 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.8333 | 1 | 0 | 1 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.5507 | 1 | 0 | 1 | 0 | 0 | ||