PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52001-52050 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.2456 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | segdup | hetalt | 0.0000 | 2.0408 | 0.0000 | 0.0000 | 1 | 48 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 87.5000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.1628 | 0.0000 | 0.0000 | 1 | 85 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 5.5556 | 0.0000 | 0.0000 | 1 | 17 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 5.0000 | 0.0000 | 0.0000 | 1 | 19 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 25.0000 | 0.0000 | 95.8333 | 1 | 3 | 0 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 95.6522 | 1 | 1 | 0 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 40.0000 | 25.0000 | 100.0000 | 92.3077 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.5714 | 0.0000 | 0.0000 | 1 | 174 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.0000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 20.0000 | 11.1111 | 100.0000 | 99.9586 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.7805 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.9899 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 33.3333 | 25.0000 | 50.0000 | 87.5000 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m0_e0 | * | 16.6667 | 9.0909 | 100.0000 | 98.6301 | 1 | 10 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m0_e0 | het | 22.2222 | 12.5000 | 100.0000 | 98.1132 | 1 | 7 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 90.0000 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 95.4545 | 1 | 4 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 91.6667 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 33.3333 | 20.0000 | 100.0000 | 96.6667 | 1 | 4 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 92.3077 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 33.3333 | 20.0000 | 100.0000 | 96.7742 | 1 | 4 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m1_e0 | het | 20.0000 | 11.1111 | 100.0000 | 98.8372 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 85.7143 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 94.7368 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e0 | het | 20.0000 | 11.1111 | 100.0000 | 98.9011 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 87.5000 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.8333 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e1 | het | 20.0000 | 11.1111 | 100.0000 | 98.9011 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 87.5000 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.0000 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m1_e0 | het | 28.5714 | 16.6667 | 100.0000 | 98.6667 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 93.7500 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e0 | het | 28.5714 | 16.6667 | 100.0000 | 98.7342 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 94.4444 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e1 | het | 28.5714 | 16.6667 | 100.0000 | 98.7342 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 94.4444 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | tech_badpromoters | * | 40.0000 | 25.0000 | 100.0000 | 87.5000 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | tech_badpromoters | homalt | 66.6667 | 50.0000 | 100.0000 | 80.0000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9532 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7342 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9514 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6301 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.5370 | 1 | 3 | 1 | 0 | 0 | ||