PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51801-51850 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.6170 | 100.0000 | 88.0000 | 95.8882 | 1 | 0 | 44 | 6 | 4 | 66.6667 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.6089 | 1 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 100.0000 | 100.0000 | 100.0000 | 99.3080 | 1 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | HG002compoundhet | homalt | 0.4762 | 12.5000 | 0.2427 | 19.8444 | 1 | 7 | 2 | 822 | 821 | 99.8783 | |
| eyeh-varpipe | INDEL | D16_PLUS | decoy | * | 22.2222 | 16.6667 | 33.3333 | 98.5915 | 1 | 5 | 1 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | decoy | het | 28.5714 | 25.0000 | 33.3333 | 98.0892 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | func_cds | homalt | 40.0000 | 25.0000 | 100.0000 | 66.6667 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 98.3333 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 98.3051 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 93.7500 | 1 | 2 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 94.4444 | 1 | 2 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.4444 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.1132 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.1220 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | segdup | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.0000 | 1 | 8 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.6732 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | decoy | homalt | 88.8889 | 100.0000 | 80.0000 | 99.7263 | 1 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7013 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5915 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9794 | 1 | 0 | 3 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9761 | 1 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.7758 | 1 | 0 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1525 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | func_cds | hetalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 1 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 54.5455 | 100.0000 | 37.5000 | 88.8889 | 1 | 0 | 3 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 2.2831 | 1.1628 | 62.5000 | 77.7778 | 1 | 85 | 5 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 10.2564 | 5.5556 | 66.6667 | 80.0000 | 1 | 17 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 14.2857 | 7.6923 | 100.0000 | 45.8333 | 1 | 12 | 13 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 50.0000 | 66.6667 | 76.9231 | 1 | 1 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | * | 27.2727 | 16.6667 | 75.0000 | 81.8182 | 1 | 5 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 81.8182 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 78.5714 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 81.2500 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 44.4444 | 33.3333 | 66.6667 | 82.3529 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m0_e0 | * | 40.0000 | 25.0000 | 100.0000 | 88.2353 | 1 | 3 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 84.6154 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 44.4444 | 33.3333 | 66.6667 | 80.0000 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 44.4444 | 33.3333 | 66.6667 | 81.2500 | 1 | 2 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | segdup | hetalt | 40.0000 | 25.0000 | 100.0000 | 94.7368 | 1 | 3 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | het | 50.0000 | 50.0000 | 50.0000 | 33.3333 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | homalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 1 | 1 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 86.7925 | 100.0000 | 76.6667 | 97.8198 | 1 | 0 | 23 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3636 | 1 | 0 | 2 | 0 | 0 | ||