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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
5101-5150 / 86044 show all
jli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8713
99.8037
99.9390
54.3200
14741291474294
44.4444
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8273
99.7901
99.8645
55.6157
147393114740205
25.0000
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7395
99.7766
99.7024
56.2348
1473733147394417
38.6364
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7968
99.7563
99.8374
54.8306
1473436147362417
70.8333
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
98.1127
99.7563
96.5225
56.9760
147343614683529422
79.7732
anovak-vgSNPtvmap_l100_m2_e1het
80.1681
92.4332
70.7766
74.1911
1473212061471860771278
21.0301
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8103
99.7360
99.8847
56.3092
147313914733174
23.5294
cchapple-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
95.5114
0.0000
0.0000
14725692000
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
74.7445
74.1265
75.3730
58.4574
1472351391470048034251
88.5072
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8000
99.6479
99.9525
54.9426
14718521472071
14.2857
hfeng-pmm3INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.6708
95.4660
99.9798
58.6016
147186991483532
66.6667
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7762
99.6141
99.9389
56.2917
14713571471591
11.1111
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50het
91.9145
93.3439
90.5282
50.5104
1471110491400214651126
76.8601
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7421
99.5938
99.8908
50.6550
147106014636167
43.7500
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7626
99.5802
99.9456
54.3815
14708621470984
50.0000
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7626
99.5735
99.9524
54.0128
14707631470872
28.5714
cchapple-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7236
99.5599
99.8877
53.8466
1470565151251710
58.8235
ciseli-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
73.3978
74.0332
72.7731
56.7536
1470351571471455053111
56.5123
ckim-vqsrSNPtvmap_l100_m1_e0*
74.6989
60.0098
98.9100
84.8150
147039798147001621
0.6173
ciseli-customSNPtimap_l150_m1_e0*
78.8472
74.5840
83.6274
80.0382
147025010146952877739
25.6865
astatham-gatkSNP*map_l150_m1_e0het
86.2499
76.0872
99.5460
82.9944
146974619146916726
38.8060
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7252
99.5058
99.9456
54.0983
14697731469884
50.0000
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
98.0582
99.4990
96.6586
57.2289
146967414695508335
65.9449
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
97.8939
99.4854
96.3524
57.0732
146947615268578432
74.7405
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7251
99.4854
99.9660
53.9892
14694761469551
20.0000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.6190
99.4381
99.8005
49.8273
1468783155113120
64.5161
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.6370
99.4177
99.8572
53.8488
1468486146862113
61.9048
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_11to50het
95.7841
93.1472
98.5746
46.7673
14680108025103363284
78.2369
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
62.9779
59.7881
66.5273
42.2033
1467298681464273677111
96.5250
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.5418
99.2552
99.8299
54.5384
14660110146752512
48.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.5687
99.2552
99.8842
53.3003
14660110146641712
70.5882
asubramanian-gatkSNP*map_l125_m2_e0*
47.7392
31.3764
99.7686
91.5938
146603206314657348
23.5294
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.5582
99.2146
99.9041
50.2607
1465411614581146
42.8571
bgallagher-sentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.2548
94.9731
99.6489
58.8526
14642775147595252
100.0000
ckim-dragenINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.2357
94.9731
99.6087
58.9389
14642775147635858
100.0000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.4030
99.1198
99.6877
55.5385
14640130150054723
48.9362
gduggal-bwafbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.5778
91.1697
96.1165
54.9134
14630141715642632605
95.7278
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.3852
99.0251
99.7479
54.5094
14626144146413715
40.5405
qzeng-customSNPtimap_l100_m2_e1homalt
88.0999
79.0797
99.4428
59.4081
146253869144578175
92.5926
mlin-fermikitINDEL*lowcmp_SimpleRepeat_diTR_11to50het
89.4933
92.7475
86.4597
53.2254
1461711431448222682204
97.1781
ciseli-customSNP*map_l125_m1_e0homalt
88.0175
86.4537
89.6388
65.9316
1461522901456916841350
80.1663
jli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1334
94.7850
99.6011
59.6178
14613804147335958
98.3051
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.3977
98.8829
99.9179
55.5579
1460516514609123
25.0000
jpowers-varprowlINDELD6_15**
59.8326
55.9329
64.3169
53.9833
14594114981458980948006
98.9128
asubramanian-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.7294
94.6488
98.9035
60.3171
1459282515424171158
92.3977
anovak-vgSNPtvmap_l125_m2_e1*
80.9704
87.5908
75.2805
76.3445
1459020671456047811080
22.5894
gduggal-snapplatSNPtvmap_l125_m1_e0*
93.2502
91.0465
95.5633
81.8317
14582143414582677351
51.8464
anovak-vgSNPtvmap_l100_m2_e0het
80.0810
92.3877
70.6676
74.1753
1457612011456660461273
21.0552
gduggal-snapplatSNPtvmap_l100_m1_e0het
94.6299
94.5320
94.7279
81.7875
1457484314572811394
48.5820
ltrigg-rtg1INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.9259
94.5255
99.4514
70.4506
14573844150468382
98.7952