PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50501-50550 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 97.9167 | 2 | 2 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 96.4286 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 96.7213 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 96.9231 | 2 | 1 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2264 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.7778 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.1220 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3333 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4848 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.3051 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 99.5208 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 96.7742 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0952 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 57.1429 | 50.0000 | 66.6667 | 97.9021 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 57.1429 | 50.0000 | 66.6667 | 97.8102 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.2963 | 2 | 0 | 2 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 2 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 2 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 57.1429 | 50.0000 | 66.6667 | 98.0645 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 57.1429 | 50.0000 | 66.6667 | 98.4615 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | segdup | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 30.7692 | 40.0000 | 25.0000 | 99.2747 | 2 | 3 | 2 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 50.0000 | 33.3333 | 99.4197 | 2 | 2 | 2 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 12.5000 | 0.0000 | 0.0000 | 2 | 14 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 5.0000 | 0.0000 | 0.0000 | 2 | 38 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 4.7619 | 0.0000 | 0.0000 | 2 | 40 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 4.6512 | 0.0000 | 0.0000 | 2 | 41 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | C1_5 | HG002complexvar | * | 31.3007 | 28.5714 | 34.6065 | 88.1221 | 2 | 5 | 299 | 565 | 143 | 25.3097 | |
| ciseli-custom | INDEL | C1_5 | HG002complexvar | het | 38.3292 | 28.5714 | 58.2090 | 91.1900 | 2 | 5 | 78 | 56 | 4 | 7.1429 | |
| ciseli-custom | INDEL | I6_15 | tech_badpromoters | * | 25.0000 | 15.3846 | 66.6667 | 57.1429 | 2 | 11 | 2 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | tech_badpromoters | het | 44.4444 | 28.5714 | 100.0000 | 60.0000 | 2 | 5 | 2 | 0 | 0 | ||
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 40.0000 | 66.6667 | 28.5714 | 89.7059 | 2 | 1 | 2 | 5 | 0 | 0.0000 | |