PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
50351-50400 / 86044 show all
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
72.7273
20300
ltrigg-rtg2SNPtvmap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
88.8889
22200
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
66.6667
66.6667
97.8873
21211
100.0000
mlin-fermikitINDEL*map_l150_m0_e0hetalt
33.3333
22.2222
66.6667
92.5000
27210
0.0000
mlin-fermikitINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
0.0000
66.6667
0.0000
0.0000
21000
mlin-fermikitINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
0.0000
66.6667
0.0000
0.0000
21000
mlin-fermikitINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.1968
20200
mlin-fermikitINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
98.6711
20220
0.0000
mlin-fermikitINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
98.6532
20220
0.0000
mlin-fermikitINDELD16_PLUSmap_l100_m0_e0hetalt
57.1429
50.0000
66.6667
87.5000
22210
0.0000
mlin-fermikitINDELD16_PLUSmap_l125_m0_e0homalt
26.6667
100.0000
15.3846
92.8177
202112
18.1818
mlin-fermikitINDELD16_PLUSmap_l250_m1_e0*
50.0000
50.0000
50.0000
95.7895
22220
0.0000
mlin-fermikitINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9287
20200
mlin-fermikitINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
99.1667
20222
100.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
80.0000
100.0000
66.6667
99.3534
20211
100.0000
ltrigg-rtg2INDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
96.9697
20200
ltrigg-rtg2INDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
96.9388
22300
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
96.8750
22300
ltrigg-rtg2INDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
91.3043
20200
ltrigg-rtg2INDELD16_PLUSmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
91.3043
21200
ltrigg-rtg2INDELD16_PLUSmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
91.6667
21200
ltrigg-rtg2INDELD16_PLUSmap_l125_m2_e1hetalt
66.6667
50.0000
100.0000
92.0000
22200
ltrigg-rtg2INDELD16_PLUSmap_l250_m1_e0het
80.0000
66.6667
100.0000
95.5556
21200
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e0het
80.0000
66.6667
100.0000
96.2963
21200
ltrigg-rtg2INDELD16_PLUSmap_l250_m2_e1het
80.0000
66.6667
100.0000
96.4286
21200
ltrigg-rtg2INDELD1_5decoyhet
100.0000
100.0000
100.0000
99.8616
20400
ltrigg-rtg2INDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2857
20200
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.2806
20200
ltrigg-rtg2INDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
98.6111
20200
ltrigg-rtg2INDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
33.3333
20200
ltrigg-rtg2INDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
66.6667
20200
ltrigg-rtg2INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.0000
20200
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.8723
20200
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
75.0000
20200
ltrigg-rtg2INDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
94.7368
20200
ltrigg-rtg2INDELD6_15map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
96.5517
20200
ltrigg-rtg2INDELD6_15map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
96.9231
20200
ltrigg-rtg2INDELD6_15map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
96.9697
20200
ltrigg-rtg2INDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
66.6667
20200
ltrigg-rtg2INDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
66.6667
50.0000
100.0000
90.0000
22200
ltrigg-rtg2INDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
80.0000
66.6667
100.0000
95.4545
21200
ltrigg-rtg2INDELI16_PLUSmap_l125_m0_e0het
66.6667
66.6667
66.6667
80.0000
21210
0.0000
ltrigg-rtg2INDELI16_PLUSmap_l125_m1_e0homalt
80.0000
66.6667
100.0000
84.6154
21200
ltrigg-rtg2INDELI16_PLUSmap_l125_m2_e0homalt
80.0000
66.6667
100.0000
88.8889
21200
ltrigg-rtg2INDELI16_PLUSmap_l125_m2_e1homalt
80.0000
66.6667
100.0000
88.8889
21200
ltrigg-rtg2INDELI16_PLUSmap_l150_m0_e0het
80.0000
100.0000
66.6667
75.0000
20210
0.0000
ltrigg-rtg2INDELI16_PLUSmap_l150_m1_e0homalt
80.0000
66.6667
100.0000
84.6154
21200
ltrigg-rtg2INDELI16_PLUSmap_l150_m2_e0homalt
80.0000
66.6667
100.0000
87.5000
21200
ltrigg-rtg2INDELI16_PLUSmap_l150_m2_e1homalt
80.0000
66.6667
100.0000
87.5000
21200