PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
50001-50050 / 86044 show all
hfeng-pmm3INDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.3607
20200
hfeng-pmm3INDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.3871
20200
hfeng-pmm3INDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8395
20200
hfeng-pmm3INDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.3220
20200
hfeng-pmm3INDELI6_15map_l250_m1_e0het
57.1429
50.0000
66.6667
97.5806
22211
100.0000
hfeng-pmm3INDELI6_15map_l250_m1_e0homalt
80.0000
66.6667
100.0000
97.1429
21200
hfeng-pmm3INDELI6_15map_l250_m2_e0homalt
80.0000
66.6667
100.0000
97.3333
21200
hfeng-pmm3INDELI6_15map_l250_m2_e1homalt
80.0000
66.6667
100.0000
97.4684
21200
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.3043
20200
hfeng-pmm3SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
hfeng-pmm3SNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.0588
20200
hfeng-pmm3SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.1220
20200
hfeng-pmm3SNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.6667
20200
hfeng-pmm3SNPtisegduphetalt
100.0000
100.0000
100.0000
98.8764
20200
hfeng-pmm3SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.3043
20200
hfeng-pmm3SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
87.5000
20100
jlack-gatkINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
40.0000
20300
jlack-gatkINDELI16_PLUSmap_l100_m1_e0hetalt
80.0000
66.6667
100.0000
93.1034
21200
jlack-gatkINDELI16_PLUSmap_l100_m2_e0hetalt
80.0000
66.6667
100.0000
94.4444
21200
jlack-gatkINDELI16_PLUSmap_l100_m2_e1hetalt
80.0000
66.6667
100.0000
94.5946
21200
jlack-gatkINDELI16_PLUSmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
90.4762
21200
jlack-gatkINDELI16_PLUSmap_l125_m1_e0homalt
80.0000
66.6667
100.0000
98.9637
21200
jlack-gatkINDELI16_PLUSmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
92.0000
21200
jlack-gatkINDELI16_PLUSmap_l125_m2_e0homalt
80.0000
66.6667
100.0000
99.0338
21200
jlack-gatkINDELI16_PLUSmap_l125_m2_e1hetalt
80.0000
66.6667
100.0000
92.0000
21200
jlack-gatkINDELI16_PLUSmap_l125_m2_e1homalt
80.0000
66.6667
100.0000
99.0338
21200
jlack-gatkINDELI16_PLUSmap_l150_m0_e0het
80.0000
100.0000
66.6667
98.2857
20210
0.0000
jlack-gatkINDELI16_PLUSmap_l150_m1_e0homalt
80.0000
66.6667
100.0000
98.8506
21200
jlack-gatkINDELI16_PLUSmap_l150_m2_e0homalt
80.0000
66.6667
100.0000
98.9071
21200
jlack-gatkINDELI16_PLUSmap_l150_m2_e1homalt
80.0000
66.6667
100.0000
98.9071
21200
jlack-gatkINDELI16_PLUStech_badpromotershet
100.0000
100.0000
100.0000
60.0000
20200
jlack-gatkINDELI16_PLUStech_badpromotershomalt
100.0000
100.0000
100.0000
66.6667
20200
jlack-gatkINDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
33.3333
20200
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
93.7500
20200
jlack-gatkINDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
98.4127
20200
jlack-gatkINDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.6842
20200
jlack-gatkINDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.7013
20200
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8657
20200
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.4751
20200
jlack-gatkINDELI6_15map_l250_m1_e0het
66.6667
50.0000
100.0000
99.2453
22200
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.3333
20200
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.3333
20200
jlack-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
jlack-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.7213
20200
jlack-gatkSNPtisegduphetalt
80.0000
100.0000
66.6667
98.9324
20211
100.0000
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200