PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TP Truth FNQuery TPQuery FPFP gt% FP ma
49951-50000 / 86044 show all
egarrison-hhgaINDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.6667
20200
egarrison-hhgaINDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.6842
20200
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8241
20200
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.1489
20200
egarrison-hhgaINDELI6_15map_l150_m0_e0het
66.6667
50.0000
100.0000
98.1132
22200
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
egarrison-hhgaSNP*map_l250_m1_e0hetalt
66.6667
50.0000
100.0000
95.9184
22200
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.9184
20200
egarrison-hhgaSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
81.8182
20200
egarrison-hhgaSNPtimap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
93.3333
22200
egarrison-hhgaSNPtisegduphetalt
100.0000
100.0000
100.0000
99.1189
20200
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
egarrison-hhgaSNPtvmap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
95.9184
22200
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
52.6316
50.0000
55.5556
97.1787
22201613
81.2500
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
80.0000
66.6667
100.0000
99.0148
21200
eyeh-varpipeINDEL*tech_badpromotershetalt
66.6667
50.0000
100.0000
77.7778
22200
eyeh-varpipeINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
76.0643
66.6667
88.5463
95.7295
2180410478
75.0000
eyeh-varpipeINDELC1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
78.6102
66.6667
95.7672
95.4210
21362164
25.0000
hfeng-pmm3INDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
97.8261
20200
hfeng-pmm3INDELD1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
20200
hfeng-pmm3INDELD6_15func_cdshetalt
100.0000
100.0000
100.0000
60.0000
20200
hfeng-pmm3INDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.0000
20200
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.1651
20200
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
hfeng-pmm3INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
90.9091
20200
hfeng-pmm3INDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
96.7213
20200
hfeng-pmm3INDELD6_15map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
95.6522
20200
hfeng-pmm3INDELD6_15map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
96.4912
20200
hfeng-pmm3INDELD6_15map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
96.5517
20200
hfeng-pmm3INDELI16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
88.8889
20200
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
57.1429
50.0000
66.6667
89.2857
22210
0.0000
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
66.6667
100.0000
21000
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
66.6667
50.0000
100.0000
84.6154
22200
hfeng-pmm3INDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
60.0000
20200
hfeng-pmm3INDELI16_PLUSmap_l100_m0_e0homalt
80.0000
100.0000
66.6667
97.6923
20210
0.0000
hfeng-pmm3INDELI16_PLUSmap_l100_m1_e0hetalt
80.0000
66.6667
100.0000
92.8571
21200
hfeng-pmm3INDELI16_PLUSmap_l100_m2_e0hetalt
80.0000
66.6667
100.0000
94.1176
21200
hfeng-pmm3INDELI16_PLUSmap_l100_m2_e1hetalt
80.0000
66.6667
100.0000
94.2857
21200
hfeng-pmm3INDELI16_PLUSmap_l125_m0_e0homalt
80.0000
100.0000
66.6667
97.4576
20210
0.0000
hfeng-pmm3INDELI16_PLUSmap_l125_m1_e0hetalt
80.0000
66.6667
100.0000
89.4737
21200
hfeng-pmm3INDELI16_PLUSmap_l125_m2_e0hetalt
80.0000
66.6667
100.0000
91.6667
21200
hfeng-pmm3INDELI16_PLUSmap_l125_m2_e1hetalt
80.0000
66.6667
100.0000
91.6667
21200
hfeng-pmm3INDELI16_PLUSmap_l150_m0_e0het
80.0000
100.0000
66.6667
96.5116
20210
0.0000
hfeng-pmm3INDELI16_PLUStech_badpromotershet
100.0000
100.0000
100.0000
66.6667
20200
hfeng-pmm3INDELI16_PLUStech_badpromotershomalt
100.0000
100.0000
100.0000
66.6667
20200
hfeng-pmm3INDELI1_5func_cdshetalt
100.0000
100.0000
100.0000
33.3333
20200
hfeng-pmm3INDELI1_5lowcmp_SimpleRepeat_triTR_51to200het
80.0000
100.0000
66.6667
88.0000
20210
0.0000
hfeng-pmm3INDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.8495
20200