PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49901-49950 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I16_PLUS | HG002compoundhet | het | 91.1593 | 87.2340 | 95.4545 | 94.5679 | 41 | 6 | 21 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.2529 | 100.0000 | 89.1304 | 87.2928 | 41 | 0 | 41 | 5 | 5 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 86.4727 | 80.3922 | 93.5484 | 94.4840 | 41 | 10 | 29 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 88.1503 | 41 | 3 | 41 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 89.2670 | 41 | 3 | 41 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.7045 | 41 | 0 | 41 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 42.2535 | 41 | 0 | 41 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.7045 | 41 | 0 | 41 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 95.3488 | 91.1111 | 100.0000 | 90.8686 | 41 | 4 | 41 | 0 | 0 | ||
| jlack-gatk | SNP | * | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 85.8065 | 41 | 2 | 41 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 42.2535 | 41 | 0 | 41 | 0 | 0 | ||
| jlack-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 85.8065 | 41 | 2 | 41 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 63.5593 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 95.3488 | 91.1111 | 100.0000 | 87.3065 | 41 | 4 | 41 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | func_cds | * | 97.6190 | 95.3488 | 100.0000 | 38.8060 | 41 | 2 | 41 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6190 | 95.3488 | 100.0000 | 77.2222 | 41 | 2 | 41 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.1595 | 87.2340 | 97.6744 | 75.0000 | 41 | 6 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.4497 | 80.3922 | 84.6154 | 93.4233 | 41 | 10 | 33 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 93.1818 | 93.1818 | 93.1818 | 91.0569 | 41 | 3 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 93.1818 | 93.1818 | 93.1818 | 91.8519 | 41 | 3 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.8235 | 100.0000 | 97.6744 | 92.4429 | 41 | 0 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m1_e0 | hetalt | 96.4706 | 100.0000 | 93.1818 | 83.5821 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 46.1538 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e1 | hetalt | 96.4706 | 95.3488 | 97.6190 | 68.1818 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 40.8451 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | hetalt | 96.4706 | 95.3488 | 97.6190 | 68.1818 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.0523 | 82.0000 | 70.9091 | 81.7276 | 41 | 9 | 39 | 16 | 13 | 81.2500 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e0 | hetalt | 95.3488 | 97.6190 | 93.1818 | 93.9643 | 41 | 1 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 94.1411 | 41 | 2 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6190 | 97.6190 | 97.6190 | 89.3401 | 41 | 1 | 41 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m1_e0 | hetalt | 96.4706 | 100.0000 | 93.1818 | 83.5821 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m2_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 85.0993 | 42 | 0 | 42 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m0_e0 | * | 93.3333 | 91.3043 | 95.4545 | 97.5528 | 42 | 4 | 42 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 91.9065 | 42 | 3 | 42 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 36.7647 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 85.0993 | 42 | 0 | 42 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m1_e0 | het | 86.4024 | 91.3043 | 82.0000 | 93.3066 | 42 | 4 | 41 | 9 | 4 | 44.4444 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.3820 | 89.3617 | 100.0000 | 88.8298 | 42 | 5 | 42 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | segdup | hetalt | 92.3077 | 85.7143 | 100.0000 | 88.8298 | 42 | 7 | 42 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | het | 83.6199 | 89.3617 | 78.5714 | 93.1540 | 42 | 5 | 22 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.5517 | 95.4545 | 97.6744 | 93.4947 | 42 | 2 | 42 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | tech_badpromoters | het | 97.6744 | 95.4545 | 100.0000 | 44.7368 | 42 | 2 | 42 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 85.7143 | 82.3529 | 89.3617 | 90.8382 | 42 | 9 | 42 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.3374 | 97.6744 | 77.3585 | 67.4847 | 42 | 1 | 41 | 12 | 5 | 41.6667 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 63.9167 | 73.6842 | 56.4356 | 98.6567 | 42 | 15 | 57 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 75.4127 | 63.6364 | 92.5373 | 98.3941 | 42 | 24 | 62 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 75.4491 | 63.6364 | 92.6471 | 98.4019 | 42 | 24 | 63 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 65.8913 | 84.0000 | 54.2056 | 64.5695 | 42 | 8 | 58 | 49 | 46 | 93.8776 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | het | 87.3023 | 91.3043 | 83.6364 | 88.7526 | 42 | 4 | 46 | 9 | 5 | 55.5556 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 93.3333 | 93.3333 | 93.3333 | 72.5610 | 42 | 3 | 42 | 3 | 2 | 66.6667 | |