PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49801-49850 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 89.6465 | 41 | 3 | 41 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.3488 | 93.1818 | 97.6190 | 73.0769 | 41 | 3 | 41 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | HG002compoundhet | het | 74.1746 | 87.2340 | 64.5161 | 91.9481 | 41 | 6 | 20 | 11 | 6 | 54.5455 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.4706 | 100.0000 | 93.1818 | 85.4305 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 88.8889 | 41 | 3 | 41 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 89.6985 | 41 | 3 | 41 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | func_cds | * | 96.4706 | 95.3488 | 97.6190 | 38.2353 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.4706 | 93.1818 | 100.0000 | 73.8854 | 41 | 3 | 41 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 41.6667 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m0_e0 | * | 90.1099 | 89.1304 | 91.1111 | 97.6923 | 41 | 5 | 41 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e0 | homalt | 94.2529 | 91.1111 | 97.6190 | 93.2039 | 41 | 4 | 41 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | het | 71.9298 | 69.4915 | 74.5455 | 87.0892 | 41 | 18 | 41 | 14 | 14 | 100.0000 | |
| jpowers-varprowl | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 43.2432 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 46.0526 | 41 | 0 | 41 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 40.8005 | 87.2340 | 26.6272 | 32.1285 | 41 | 6 | 45 | 124 | 115 | 92.7419 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e1 | hetalt | 46.6253 | 31.0606 | 93.4579 | 92.4542 | 41 | 91 | 100 | 7 | 5 | 71.4286 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.3488 | 93.1818 | 97.6190 | 96.9979 | 41 | 3 | 41 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 88.4507 | 41 | 3 | 41 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.4706 | 93.1818 | 100.0000 | 89.3782 | 41 | 3 | 41 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.4706 | 93.1818 | 100.0000 | 72.8477 | 41 | 3 | 41 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | homalt | 65.0794 | 48.2353 | 100.0000 | 84.9265 | 41 | 44 | 41 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | segdup | hetalt | 92.1348 | 85.4167 | 100.0000 | 94.7165 | 41 | 7 | 41 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 95.2934 | 95.3488 | 95.2381 | 76.6667 | 41 | 2 | 40 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 73.7303 | 60.2941 | 94.8718 | 76.2195 | 41 | 27 | 37 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 73.7303 | 60.2941 | 94.8718 | 77.3256 | 41 | 27 | 37 | 2 | 1 | 50.0000 | |
| ckim-vqsr | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 41.6667 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m0_e0 | homalt | 35.0427 | 21.2435 | 100.0000 | 98.4405 | 41 | 152 | 41 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.3488 | 93.1818 | 97.6190 | 96.9828 | 41 | 3 | 41 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.1818 | 100.0000 | 87.2340 | 88.3663 | 41 | 0 | 41 | 6 | 6 | 100.0000 | |
| dgrover-gatk | SNP | * | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 73.7179 | 41 | 1 | 41 | 0 | 0 | ||
| dgrover-gatk | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 42.4658 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6190 | 97.6190 | 97.6190 | 89.5262 | 41 | 1 | 41 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 73.7179 | 41 | 1 | 41 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 42.2535 | 41 | 0 | 41 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 58.9928 | 54.6667 | 64.0625 | 54.2857 | 41 | 34 | 41 | 23 | 22 | 95.6522 | |
| ndellapenna-hhga | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 46.0526 | 41 | 0 | 41 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 89.9369 | 95.3488 | 85.1064 | 76.1421 | 41 | 2 | 40 | 7 | 5 | 71.4286 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 73.2143 | 71.9298 | 74.5455 | 99.3650 | 41 | 16 | 41 | 14 | 6 | 42.8571 | |
| mlin-fermikit | INDEL | D6_15 | func_cds | * | 97.6190 | 95.3488 | 100.0000 | 48.7500 | 41 | 2 | 41 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l125_m1_e0 | het | 71.5939 | 64.0625 | 81.1321 | 82.2742 | 41 | 23 | 43 | 10 | 5 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | * | 51.5723 | 35.9649 | 91.1111 | 94.1710 | 41 | 73 | 41 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | func_cds | * | 96.4706 | 95.3488 | 97.6190 | 37.3134 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | tech_badpromoters | homalt | 95.3488 | 100.0000 | 91.1111 | 40.0000 | 41 | 0 | 41 | 4 | 4 | 100.0000 | |
| qzeng-custom | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 41.1765 | 41 | 0 | 40 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 91.9717 | 89.1304 | 95.0000 | 84.6743 | 41 | 5 | 38 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.1830 | 87.2340 | 97.7273 | 64.2276 | 41 | 6 | 43 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.2258 | 91.1111 | 97.5610 | 74.2138 | 41 | 4 | 40 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.3752 | 93.1818 | 97.6744 | 77.3684 | 41 | 3 | 42 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 38.9095 | 89.1304 | 24.8869 | 85.7327 | 41 | 5 | 55 | 166 | 1 | 0.6024 | |
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 89.1304 | 80.3922 | 100.0000 | 96.0784 | 41 | 10 | 2 | 0 | 0 | ||