PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49601-49650 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | hetalt | 47.0062 | 31.4516 | 93.0000 | 92.1198 | 39 | 85 | 93 | 7 | 5 | 71.4286 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7342 | 100.0000 | 97.5000 | 94.5055 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | segdup | hetalt | 88.6364 | 79.5918 | 100.0000 | 89.4472 | 39 | 10 | 42 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | het | 78.7879 | 65.0000 | 100.0000 | 97.5549 | 39 | 21 | 39 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 76.5438 | 63.9344 | 95.3488 | 51.1364 | 39 | 22 | 41 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 83.1081 | 75.0000 | 93.1818 | 44.3038 | 39 | 13 | 41 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | D6_15 | func_cds | * | 95.2381 | 93.0233 | 97.5610 | 48.1013 | 40 | 3 | 40 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 70.5404 | 70.1754 | 70.9091 | 97.0238 | 40 | 17 | 39 | 16 | 5 | 31.2500 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 91.9540 | 85.1064 | 100.0000 | 91.5789 | 40 | 7 | 40 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 91.9922 | 40 | 8 | 41 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.9540 | 97.5610 | 86.9565 | 88.1748 | 40 | 1 | 40 | 6 | 6 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.7654 | 97.5610 | 100.0000 | 91.7355 | 40 | 1 | 40 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.3855 | 95.2381 | 97.5610 | 89.5939 | 40 | 2 | 40 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 93.2546 | 40 | 2 | 40 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 93.3665 | 40 | 3 | 40 | 0 | 0 | ||
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 97.5610 | 95.2381 | 100.0000 | 97.3788 | 40 | 2 | 40 | 0 | 0 | ||
| dgrover-gatk | SNP | * | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 71.2230 | 40 | 1 | 40 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.7654 | 97.5610 | 100.0000 | 91.8699 | 40 | 1 | 40 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 71.2230 | 40 | 1 | 40 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 88.0965 | 85.1064 | 91.3043 | 75.1351 | 40 | 7 | 42 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 85.1064 | 88.8889 | 81.6327 | 79.4118 | 40 | 5 | 40 | 9 | 5 | 55.5556 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.2381 | 90.9091 | 100.0000 | 72.9730 | 40 | 4 | 40 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l100_m2_e1 | hetalt | 95.2381 | 93.0233 | 97.5610 | 79.3970 | 40 | 3 | 40 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e1 | hetalt | 95.2381 | 93.0233 | 97.5610 | 79.3970 | 40 | 3 | 40 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | hetalt | 47.6427 | 32.0000 | 93.2039 | 92.5254 | 40 | 85 | 96 | 7 | 5 | 71.4286 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | het | 49.0643 | 33.0579 | 95.1220 | 92.7690 | 40 | 81 | 39 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | het | 48.7652 | 32.7869 | 95.1220 | 93.0034 | 40 | 82 | 39 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 84.2105 | 72.7273 | 100.0000 | 61.9048 | 40 | 15 | 40 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | * | 50.9554 | 35.3982 | 90.9091 | 94.0860 | 40 | 73 | 40 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.2381 | 90.9091 | 100.0000 | 74.1722 | 40 | 4 | 39 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.9540 | 86.9565 | 97.5610 | 48.7500 | 40 | 6 | 40 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 93.7600 | 40 | 8 | 39 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m0_e0 | * | 93.0233 | 86.9565 | 100.0000 | 94.9068 | 40 | 6 | 41 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 74.7296 | 60.6061 | 97.4359 | 66.9492 | 40 | 26 | 38 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 94.1176 | 88.8889 | 100.0000 | 93.7591 | 40 | 5 | 43 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 65.5172 | 40 | 3 | 40 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 81.8253 | 70.1754 | 98.1132 | 94.2888 | 40 | 17 | 52 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | segdup | hetalt | 0.0000 | 81.6327 | 0.0000 | 0.0000 | 40 | 9 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 73.9161 | 59.7015 | 97.0149 | 91.4650 | 40 | 27 | 65 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 77.2881 | 66.6667 | 91.9355 | 98.3812 | 40 | 20 | 57 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I1_5 | segdup | hetalt | 90.9091 | 83.3333 | 100.0000 | 95.9128 | 40 | 8 | 15 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | func_cds | * | 79.2079 | 93.0233 | 68.9655 | 30.1205 | 40 | 3 | 40 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.2079 | 65.5738 | 100.0000 | 54.0984 | 40 | 21 | 28 | 0 | 0 | ||
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5900 | 97.5610 | 97.6190 | 93.3754 | 40 | 1 | 41 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.3260 | 97.5610 | 95.1220 | 92.6391 | 40 | 1 | 39 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | hetalt | 96.3855 | 93.0233 | 100.0000 | 65.5172 | 40 | 3 | 40 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 91.9540 | 85.1064 | 100.0000 | 91.7526 | 40 | 7 | 40 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 90.9091 | 83.3333 | 100.0000 | 92.1905 | 40 | 8 | 41 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 93.0988 | 88.8889 | 97.7273 | 93.3333 | 40 | 5 | 43 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 44.9438 | 31.4961 | 78.4314 | 66.6667 | 40 | 87 | 40 | 11 | 11 | 100.0000 | |