PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49551-49600 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.0120 | 39 | 0 | 39 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 79.5918 | 0.0000 | 0.0000 | 39 | 10 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | func_cds | * | 85.9267 | 90.6977 | 81.6327 | 50.0000 | 39 | 4 | 40 | 9 | 1 | 11.1111 | |
| mlin-fermikit | INDEL | D1_5 | segdup | hetalt | 85.7143 | 75.0000 | 100.0000 | 94.3820 | 39 | 13 | 40 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 83.8710 | 95.1220 | 75.0000 | 87.3786 | 39 | 2 | 39 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_siren | het | 81.2500 | 79.5918 | 82.9787 | 86.6856 | 39 | 10 | 39 | 8 | 5 | 62.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 19.4706 | 14.4444 | 29.8611 | 63.4518 | 39 | 231 | 43 | 101 | 70 | 69.3069 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 56.5217 | 0.0000 | 0.0000 | 39 | 30 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | homalt | 92.3386 | 88.6364 | 96.3636 | 92.4554 | 39 | 5 | 53 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | SNP | ti | tech_badpromoters | het | 91.7647 | 88.6364 | 95.1220 | 57.2917 | 39 | 5 | 39 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m1_e0 | homalt | 81.2500 | 68.4211 | 100.0000 | 96.5570 | 39 | 18 | 45 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l100_m1_e0 | het | 43.8202 | 30.9524 | 75.0000 | 93.9394 | 39 | 87 | 27 | 9 | 1 | 11.1111 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | het | 86.6667 | 100.0000 | 76.4706 | 94.7639 | 39 | 0 | 39 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | segdup | homalt | 86.6667 | 78.0000 | 97.5000 | 90.4988 | 39 | 11 | 39 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.6615 | 0.0000 | 0.0000 | 39 | 5857 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.6615 | 0.0000 | 0.0000 | 39 | 5857 | 0 | 0 | 0 | ||
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 83.8710 | 95.1220 | 75.0000 | 93.0667 | 39 | 2 | 39 | 13 | 10 | 76.9231 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | * | 81.2500 | 73.5849 | 90.6977 | 82.0084 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e0 | * | 81.2500 | 73.5849 | 90.6977 | 84.4765 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e1 | * | 81.2500 | 73.5849 | 90.6977 | 85.1724 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | SNP | * | map_l100_m1_e0 | hetalt | 93.9759 | 95.1220 | 92.8571 | 85.7627 | 39 | 2 | 39 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m1_e0 | hetalt | 93.9759 | 95.1220 | 92.8571 | 85.7627 | 39 | 2 | 39 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | tech_badpromoters | homalt | 95.1220 | 100.0000 | 90.6977 | 67.1756 | 39 | 0 | 39 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.1519 | 95.1220 | 87.5000 | 86.9767 | 39 | 2 | 49 | 7 | 6 | 85.7143 | |
| asubramanian-gatk | INDEL | I6_15 | func_cds | * | 93.9759 | 90.6977 | 97.5000 | 42.8571 | 39 | 4 | 39 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.2277 | 92.8571 | 66.1017 | 96.4046 | 39 | 3 | 39 | 20 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_siren | hetalt | 65.0000 | 48.1481 | 100.0000 | 84.2105 | 39 | 42 | 39 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7342 | 100.0000 | 97.5000 | 94.3583 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7342 | 100.0000 | 97.5000 | 94.2775 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | map_l100_m1_e0 | hetalt | 97.5000 | 95.1220 | 100.0000 | 70.4545 | 39 | 2 | 39 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m1_e0 | hetalt | 97.5000 | 95.1220 | 100.0000 | 70.4545 | 39 | 2 | 39 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_siren | hetalt | 65.0000 | 48.1481 | 100.0000 | 83.7500 | 39 | 42 | 39 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 30.5882 | 23.0769 | 45.3488 | 45.7413 | 39 | 130 | 78 | 94 | 74 | 78.7234 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | het | 79.8362 | 82.9787 | 76.9231 | 92.2619 | 39 | 8 | 40 | 12 | 7 | 58.3333 | |
| asubramanian-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 96.2963 | 92.8571 | 100.0000 | 93.8583 | 39 | 3 | 39 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 95.1220 | 90.6977 | 100.0000 | 93.9908 | 39 | 4 | 39 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l250_m1_e0 | homalt | 69.3408 | 88.6364 | 56.9444 | 94.4573 | 39 | 5 | 41 | 31 | 28 | 90.3226 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.1937 | 39 | 0 | 39 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 79.5918 | 66.1017 | 100.0000 | 69.0476 | 39 | 20 | 39 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.1220 | 95.1220 | 95.1220 | 91.5638 | 39 | 2 | 39 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m1_e0 | hetalt | 96.2963 | 95.1220 | 97.5000 | 65.5172 | 39 | 2 | 39 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.2963 | 95.1220 | 97.5000 | 91.1700 | 39 | 2 | 39 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | hetalt | 96.2963 | 95.1220 | 97.5000 | 65.5172 | 39 | 2 | 39 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | hetalt | 95.1220 | 97.5000 | 92.8571 | 93.4783 | 39 | 1 | 39 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | tech_badpromoters | het | 98.7342 | 100.0000 | 97.5000 | 49.3671 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.7826 | 81.2500 | 88.6364 | 91.1824 | 39 | 9 | 39 | 5 | 2 | 40.0000 | |
| egarrison-hhga | INDEL | * | tech_badpromoters | het | 98.7342 | 100.0000 | 97.5000 | 49.3671 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l100_m2_e0 | hetalt | 95.1220 | 92.8571 | 97.5000 | 79.6954 | 39 | 3 | 39 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e0 | hetalt | 95.1220 | 92.8571 | 97.5000 | 79.6954 | 39 | 3 | 39 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 54.6512 | 39 | 0 | 39 | 0 | 0 | ||