PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49451-49500 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I6_15 | HG002compoundhet | het | 17.3297 | 18.2692 | 16.4820 | 51.6410 | 38 | 170 | 119 | 603 | 564 | 93.5323 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 44.9704 | 31.1475 | 80.8511 | 62.9921 | 38 | 84 | 38 | 9 | 6 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | segdup | het | 58.0153 | 45.7831 | 79.1667 | 89.8520 | 38 | 45 | 38 | 10 | 9 | 90.0000 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 95.0000 | 0.0000 | 0.0000 | 38 | 2 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 51.5789 | 38 | 1 | 46 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | het | 95.8628 | 97.4359 | 94.3396 | 91.6535 | 38 | 1 | 50 | 3 | 1 | 33.3333 | |
| cchapple-custom | SNP | tv | tech_badpromoters | homalt | 97.4021 | 97.4359 | 97.3684 | 49.3333 | 38 | 1 | 37 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 95.0000 | 90.4762 | 100.0000 | 97.4342 | 38 | 4 | 38 | 0 | 0 | ||
| ckim-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 89.4118 | 80.8511 | 100.0000 | 30.9091 | 38 | 9 | 38 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.0000 | 90.4762 | 100.0000 | 99.3499 | 38 | 4 | 38 | 0 | 0 | ||
| ciseli-custom | SNP | tv | tech_badpromoters | homalt | 96.1368 | 97.4359 | 94.8718 | 56.1798 | 38 | 1 | 37 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 49.3333 | 38 | 1 | 38 | 0 | 0 | ||
| ckim-dragen | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.2500 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 53.0864 | 38 | 1 | 38 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.8571 | 92.8571 | 92.8571 | 99.3463 | 39 | 3 | 39 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 95.1220 | 100.0000 | 90.6977 | 95.4974 | 39 | 0 | 39 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 45.6140 | 82.9787 | 31.4516 | 52.4904 | 39 | 8 | 39 | 85 | 76 | 89.4118 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.1314 | 0.0000 | 0.0000 | 39 | 905 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 32.1213 | 27.4648 | 38.6792 | 40.1130 | 39 | 103 | 41 | 65 | 65 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 57.4870 | 54.9296 | 60.2941 | 93.6685 | 39 | 32 | 41 | 27 | 5 | 18.5185 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 57.4870 | 54.9296 | 60.2941 | 93.7672 | 39 | 32 | 41 | 27 | 5 | 18.5185 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.5360 | 0.0000 | 0.0000 | 39 | 2500 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 92.8571 | 0.0000 | 0.0000 | 39 | 3 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 90.6977 | 0.0000 | 0.0000 | 39 | 4 | 0 | 0 | 0 | ||
| ciseli-custom | SNP | ti | tech_badpromoters | homalt | 95.0609 | 95.1220 | 95.0000 | 49.3671 | 39 | 2 | 38 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m1_e0 | het | 97.5000 | 100.0000 | 95.1220 | 93.8806 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5000 | 95.1220 | 100.0000 | 91.0112 | 39 | 2 | 48 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | map_l125_m1_e0 | * | 72.2222 | 73.5849 | 70.9091 | 89.9818 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e0 | * | 72.2222 | 73.5849 | 70.9091 | 91.2141 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | * | 72.2222 | 73.5849 | 70.9091 | 91.4197 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 78.7879 | 65.0000 | 100.0000 | 89.2265 | 39 | 21 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 87.6651 | 79.5918 | 97.5610 | 83.9844 | 39 | 10 | 40 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 47.2727 | 31.9672 | 90.6977 | 87.2024 | 39 | 83 | 39 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e0 | het | 78.0000 | 63.9344 | 100.0000 | 94.7651 | 39 | 22 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e1 | het | 78.0000 | 63.9344 | 100.0000 | 94.8752 | 39 | 22 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | segdup | homalt | 90.6977 | 82.9787 | 100.0000 | 93.1860 | 39 | 8 | 37 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | tech_badpromoters | het | 92.8571 | 88.6364 | 97.5000 | 65.2174 | 39 | 5 | 39 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.2779 | 0.0000 | 0.0000 | 39 | 13993 | 0 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.7647 | 95.1220 | 88.6364 | 91.7448 | 39 | 2 | 39 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.6087 | 39 | 0 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m1_e0 | homalt | 52.7027 | 35.7798 | 100.0000 | 97.9835 | 39 | 70 | 39 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.7500 | 39 | 0 | 37 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 2.8846 | 0.0000 | 0.0000 | 39 | 1313 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l150_m1_e0 | het | 84.7826 | 100.0000 | 73.5849 | 94.5697 | 39 | 0 | 39 | 14 | 10 | 71.4286 | |
| gduggal-bwavard | INDEL | I16_PLUS | HG002compoundhet | * | 2.2297 | 1.8199 | 2.8777 | 49.0469 | 39 | 2104 | 40 | 1350 | 1263 | 93.5556 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 71.5596 | 75.0000 | 68.4211 | 65.4545 | 39 | 13 | 39 | 18 | 18 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m1_e0 | het | 95.4545 | 100.0000 | 91.3043 | 89.6163 | 39 | 0 | 42 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 33.5518 | 21.9101 | 71.5909 | 58.0952 | 39 | 139 | 63 | 25 | 25 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 32.5233 | 24.3750 | 48.8550 | 47.4950 | 39 | 121 | 128 | 134 | 134 | 100.0000 | |