PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49351-49400 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 93.8272 | 90.4762 | 97.4359 | 93.7500 | 38 | 4 | 38 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 92.6829 | 88.3721 | 97.4359 | 93.8291 | 38 | 5 | 38 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 90.4762 | 97.4359 | 84.4444 | 95.1665 | 38 | 1 | 38 | 7 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.2131 | 38 | 2 | 38 | 0 | 0 | ||
| jlack-gatk | SNP | tv | tech_badpromoters | homalt | 98.7013 | 97.4359 | 100.0000 | 53.0864 | 38 | 1 | 38 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l125_m2_e0 | hetalt | 95.0000 | 90.4762 | 100.0000 | 93.1777 | 38 | 4 | 38 | 0 | 0 | ||
| jli-custom | INDEL | * | map_l125_m2_e1 | hetalt | 93.8272 | 88.3721 | 100.0000 | 93.2981 | 38 | 5 | 38 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 83.7927 | 80.8511 | 86.9565 | 77.0000 | 38 | 9 | 40 | 6 | 5 | 83.3333 | |
| qzeng-custom | INDEL | * | map_l250_m0_e0 | het | 76.6159 | 71.6981 | 82.2581 | 99.2102 | 38 | 15 | 51 | 11 | 6 | 54.5455 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | hetalt | 95.0000 | 90.4762 | 100.0000 | 91.2442 | 38 | 4 | 38 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l125_m2_e1 | hetalt | 93.8272 | 88.3721 | 100.0000 | 91.4607 | 38 | 5 | 38 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.0000 | 90.4762 | 100.0000 | 99.0568 | 38 | 4 | 40 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.5663 | 92.6829 | 90.4762 | 73.2484 | 38 | 3 | 38 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l100_m1_e0 | hetalt | 96.2025 | 92.6829 | 100.0000 | 63.4615 | 38 | 3 | 38 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 89.4118 | 80.8511 | 100.0000 | 95.5556 | 38 | 9 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 88.3721 | 79.1667 | 100.0000 | 96.0784 | 38 | 10 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 83.6115 | 80.8511 | 86.5672 | 94.8102 | 38 | 9 | 58 | 9 | 3 | 33.3333 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 62.3646 | 92.6829 | 46.9925 | 68.5950 | 38 | 3 | 125 | 141 | 118 | 83.6879 | |
| mlin-fermikit | SNP | ti | tech_badpromoters | het | 92.6829 | 86.3636 | 100.0000 | 41.5385 | 38 | 6 | 38 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | tech_badpromoters | homalt | 95.0000 | 97.4359 | 92.6829 | 49.3827 | 38 | 1 | 38 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m1_e0 | hetalt | 96.2025 | 92.6829 | 100.0000 | 63.4615 | 38 | 3 | 38 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 85.3933 | 74.5098 | 100.0000 | 28.5714 | 38 | 13 | 40 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | tech_badpromoters | het | 97.4359 | 97.4359 | 97.4359 | 49.3506 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l150_m1_e0 | het | 96.5358 | 97.4359 | 95.6522 | 91.9298 | 38 | 1 | 44 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | het | 70.3704 | 79.1667 | 63.3333 | 95.2978 | 38 | 10 | 38 | 22 | 19 | 86.3636 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m1_e0 | het | 86.3636 | 97.4359 | 77.5510 | 92.9191 | 38 | 1 | 38 | 11 | 11 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 56.9052 | 57.5758 | 56.2500 | 83.0239 | 38 | 28 | 36 | 28 | 28 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 77.9385 | 92.6829 | 67.2414 | 94.0695 | 38 | 3 | 39 | 19 | 6 | 31.5789 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.1610 | 90.4762 | 73.5849 | 91.1519 | 38 | 4 | 39 | 14 | 2 | 14.2857 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | homalt | 98.7013 | 97.4359 | 100.0000 | 56.8182 | 38 | 1 | 38 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.1963 | 82.6087 | 94.5946 | 86.1423 | 38 | 8 | 35 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.2547 | 79.1667 | 94.7368 | 87.3754 | 38 | 10 | 36 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 89.4118 | 80.8511 | 100.0000 | 93.5201 | 38 | 9 | 37 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7013 | 97.4359 | 100.0000 | 88.2353 | 38 | 1 | 38 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 72.3623 | 57.5758 | 97.3684 | 68.0672 | 38 | 28 | 37 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 92.6829 | 92.6829 | 92.6829 | 73.8854 | 38 | 3 | 38 | 3 | 3 | 100.0000 | |
| jli-custom | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.2500 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | tech_badpromoters | het | 98.7013 | 97.4359 | 100.0000 | 51.8987 | 38 | 1 | 38 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | tech_badpromoters | homalt | 98.7013 | 97.4359 | 100.0000 | 54.7619 | 38 | 1 | 38 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | hetalt | 85.3933 | 88.3721 | 82.6087 | 84.8684 | 38 | 5 | 38 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | hetalt | 85.3933 | 88.3721 | 82.6087 | 84.8684 | 38 | 5 | 38 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 28.7879 | 0.0000 | 0.0000 | 38 | 94 | 0 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 29.0076 | 92.6829 | 17.1946 | 91.1987 | 38 | 3 | 38 | 183 | 8 | 4.3716 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 69.5652 | 66.6667 | 72.7273 | 99.4295 | 38 | 19 | 40 | 15 | 9 | 60.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 78.7251 | 92.6829 | 68.4211 | 93.1408 | 38 | 3 | 39 | 18 | 6 | 33.3333 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.3252 | 90.4762 | 72.2222 | 91.7808 | 38 | 4 | 39 | 15 | 2 | 13.3333 | |
| ghariani-varprowl | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 55.1724 | 38 | 1 | 38 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l125_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 92.7203 | 38 | 2 | 38 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 52.1262 | 44.7059 | 62.5000 | 60.0000 | 38 | 47 | 20 | 12 | 9 | 75.0000 | |