PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49301-49350 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.3580 | 88.0952 | 94.8718 | 99.3834 | 37 | 5 | 37 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 96.1039 | 94.8718 | 97.3684 | 95.3939 | 37 | 2 | 37 | 1 | 0 | 0.0000 | |
| anovak-vg | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 17.0507 | 0.0000 | 0.0000 | 37 | 180 | 0 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.3580 | 88.0952 | 94.8718 | 99.3893 | 37 | 5 | 37 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 78.8889 | 37 | 0 | 38 | 0 | 0 | ||
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.6380 | 90.2439 | 97.2973 | 85.9316 | 37 | 4 | 36 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 79.7872 | 37 | 0 | 38 | 0 | 0 | ||
| cchapple-custom | INDEL | D16_PLUS | segdup | het | 96.7033 | 100.0000 | 93.6170 | 95.2090 | 37 | 0 | 44 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 79.3814 | 37 | 0 | 40 | 0 | 0 | ||
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 51.3139 | 90.2439 | 35.8491 | 90.7906 | 37 | 4 | 38 | 68 | 7 | 10.2941 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 35.8093 | 88.0952 | 22.4719 | 78.2396 | 37 | 5 | 40 | 138 | 3 | 2.1739 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 92.9119 | 37 | 5 | 37 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.0057 | 37 | 6 | 37 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 93.5875 | 37 | 5 | 37 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.7075 | 37 | 6 | 37 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | segdup | het | 89.7436 | 100.0000 | 81.3953 | 97.3292 | 37 | 0 | 35 | 8 | 1 | 12.5000 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | het | 92.1053 | 100.0000 | 85.3659 | 97.5405 | 37 | 0 | 35 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 81.8182 | 37 | 0 | 38 | 0 | 0 | ||
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.0575 | 88.0952 | 82.2222 | 96.8750 | 37 | 5 | 37 | 8 | 1 | 12.5000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 73.3791 | 60.6557 | 92.8571 | 56.2500 | 37 | 24 | 39 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 17.0866 | 13.7546 | 22.5490 | 86.7704 | 37 | 232 | 23 | 79 | 9 | 11.3924 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 54.4118 | 56.0606 | 52.8571 | 97.3242 | 37 | 29 | 37 | 33 | 26 | 78.7879 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 54.4118 | 56.0606 | 52.8571 | 97.3987 | 37 | 29 | 37 | 33 | 26 | 78.7879 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 1.6895 | 0.0000 | 0.0000 | 37 | 2153 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 2.0892 | 0.0000 | 0.0000 | 37 | 1734 | 0 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | segdup | het | 90.9091 | 100.0000 | 83.3333 | 96.7033 | 37 | 0 | 35 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 100.0000 | 100.0000 | 100.0000 | 79.2350 | 37 | 0 | 38 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | segdup | het | 96.2025 | 100.0000 | 92.6829 | 92.4908 | 37 | 0 | 38 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 80.4348 | 67.2727 | 100.0000 | 66.0377 | 37 | 18 | 36 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | segdup | het | 90.9091 | 100.0000 | 83.3333 | 97.3897 | 37 | 0 | 35 | 7 | 1 | 14.2857 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 84.0909 | 72.5490 | 100.0000 | 42.6471 | 37 | 14 | 39 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | segdup | homalt | 88.0952 | 78.7234 | 100.0000 | 87.9870 | 37 | 10 | 37 | 0 | 0 | ||
| ckim-isaac | SNP | ti | tech_badpromoters | homalt | 94.8718 | 90.2439 | 100.0000 | 22.9167 | 37 | 4 | 37 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 93.5875 | 37 | 5 | 37 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.7075 | 37 | 6 | 37 | 0 | 0 | ||
| jlack-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 94.8718 | 92.5000 | 97.3684 | 93.0657 | 37 | 3 | 37 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | segdup | het | 97.2973 | 100.0000 | 94.7368 | 97.4717 | 37 | 0 | 36 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6667 | 100.0000 | 97.3684 | 87.5000 | 37 | 0 | 37 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | tech_badpromoters | het | 97.3684 | 94.8718 | 100.0000 | 50.0000 | 37 | 2 | 37 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | het | 95.8904 | 100.0000 | 92.1053 | 95.6867 | 37 | 0 | 35 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | het | 94.5946 | 100.0000 | 89.7436 | 95.7330 | 37 | 0 | 35 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.6263 | 37 | 0 | 37 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6667 | 100.0000 | 97.3684 | 76.9697 | 37 | 0 | 37 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | het | 94.5946 | 100.0000 | 89.7436 | 96.2998 | 37 | 0 | 35 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 62.2449 | 37 | 0 | 37 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6667 | 100.0000 | 97.3684 | 77.6471 | 37 | 0 | 37 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7013 | 100.0000 | 97.4359 | 78.8043 | 37 | 0 | 38 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | hetalt | 96.1039 | 92.5000 | 100.0000 | 93.0057 | 37 | 3 | 37 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6667 | 100.0000 | 97.3684 | 76.3975 | 37 | 0 | 37 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7013 | 97.4359 | 100.0000 | 91.2644 | 38 | 1 | 38 | 0 | 0 | ||