PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49201-49250 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 70.8661 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | func_cds | * | 84.7059 | 83.7209 | 85.7143 | 51.7241 | 36 | 7 | 36 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 63.1287 | 83.7209 | 50.6667 | 72.8261 | 36 | 7 | 38 | 37 | 25 | 67.5676 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 32.8326 | 22.5000 | 60.7143 | 91.1532 | 36 | 124 | 34 | 22 | 12 | 54.5455 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 56.6265 | 36 | 3 | 36 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e1 | homalt | 98.6301 | 97.2973 | 100.0000 | 89.5652 | 36 | 1 | 36 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 68.1034 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m1_e0 | hetalt | 84.7059 | 87.8049 | 81.8182 | 83.2700 | 36 | 5 | 36 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | segdup | * | 81.9440 | 76.5957 | 88.0952 | 93.0116 | 36 | 11 | 37 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | * | 83.7209 | 83.7209 | 83.7209 | 37.6812 | 36 | 7 | 36 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 69.2308 | 61.0169 | 80.0000 | 61.2069 | 36 | 23 | 36 | 9 | 8 | 88.8889 | |
| gduggal-snapplat | INDEL | * | map_l250_m0_e0 | het | 73.2968 | 67.9245 | 79.5918 | 99.0360 | 36 | 17 | 39 | 10 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m0_e0 | * | 82.6230 | 78.2609 | 87.5000 | 98.7626 | 36 | 10 | 42 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 16.5989 | 10.9091 | 34.6939 | 47.3118 | 36 | 294 | 34 | 64 | 12 | 18.7500 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 21.3305 | 14.5749 | 39.7590 | 79.5062 | 36 | 211 | 33 | 50 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | hetalt | 84.7059 | 87.8049 | 81.8182 | 83.2700 | 36 | 5 | 36 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e1 | het | 83.5267 | 76.5957 | 91.8367 | 83.1034 | 36 | 11 | 45 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 54.9618 | 39.1304 | 92.3077 | 70.6767 | 36 | 56 | 36 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | segdup | het | 87.3006 | 97.2973 | 79.1667 | 95.5679 | 36 | 1 | 38 | 10 | 8 | 80.0000 | |
| ghariani-varprowl | INDEL | D6_15 | func_cds | * | 86.7470 | 83.7209 | 90.0000 | 58.3333 | 36 | 7 | 36 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 36.3636 | 0.0000 | 0.0000 | 36 | 63 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | segdup | hetalt | 0.0000 | 71.1538 | 0.0000 | 0.0000 | 37 | 15 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 39.3617 | 24.5033 | 100.0000 | 15.9091 | 37 | 114 | 37 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | segdup | hetalt | 82.7740 | 82.2222 | 83.3333 | 86.0465 | 37 | 8 | 10 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 39.0387 | 28.0303 | 64.2857 | 93.0175 | 37 | 95 | 36 | 20 | 6 | 30.0000 | |
| gduggal-snapplat | SNP | ti | tech_badpromoters | homalt | 94.8718 | 90.2439 | 100.0000 | 44.7761 | 37 | 4 | 37 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l100_m2_e0 | hetalt | 85.0575 | 88.0952 | 82.2222 | 85.0993 | 37 | 5 | 37 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 29.6000 | 0.0000 | 0.0000 | 37 | 88 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | * | 80.4348 | 78.7234 | 82.2222 | 94.5189 | 37 | 10 | 37 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | INDEL | * | tech_badpromoters | het | 81.3187 | 94.8718 | 71.1538 | 54.3860 | 37 | 2 | 37 | 15 | 15 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | * | 45.1325 | 31.6239 | 78.7879 | 95.2518 | 37 | 80 | 26 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 58.9713 | 44.0476 | 89.1892 | 83.3333 | 37 | 47 | 33 | 4 | 2 | 50.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e0 | hetalt | 85.0575 | 88.0952 | 82.2222 | 85.0993 | 37 | 5 | 37 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 9.9949 | 5.3085 | 85.2941 | 78.6164 | 37 | 660 | 58 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 70.3015 | 64.9123 | 76.6667 | 98.8432 | 37 | 20 | 69 | 21 | 16 | 76.1905 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 50.6572 | 90.2439 | 35.2113 | 79.8867 | 37 | 4 | 25 | 46 | 14 | 30.4348 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 75.5102 | 62.7119 | 94.8718 | 85.9206 | 37 | 22 | 37 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | segdup | hetalt | 89.1566 | 82.2222 | 97.3684 | 92.6070 | 37 | 8 | 37 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | tech_badpromoters | homalt | 94.8718 | 90.2439 | 100.0000 | 44.7761 | 37 | 4 | 37 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.2688 | 0.0000 | 0.0000 | 37 | 13727 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 29.7953 | 74.0000 | 18.6528 | 60.2062 | 37 | 13 | 36 | 157 | 149 | 94.9045 | |
| gduggal-bwavard | INDEL | D1_5 | HG002compoundhet | hetalt | 0.0000 | 0.3622 | 0.0000 | 0.0000 | 37 | 10179 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | func_cds | * | 89.1566 | 86.0465 | 92.5000 | 58.7629 | 37 | 6 | 37 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | * | 76.2887 | 78.7234 | 74.0000 | 94.1725 | 37 | 10 | 37 | 13 | 8 | 61.5385 | |
| gduggal-bwavard | INDEL | D6_15 | segdup | homalt | 85.0575 | 74.0000 | 100.0000 | 89.8630 | 37 | 13 | 37 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | segdup | * | 77.0833 | 78.7234 | 75.5102 | 94.6389 | 37 | 10 | 37 | 12 | 6 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.2461 | 13.7546 | 75.0000 | 92.9078 | 37 | 232 | 30 | 10 | 5 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.7542 | 72.5490 | 75.0000 | 92.6740 | 37 | 14 | 30 | 10 | 5 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | func_cds | * | 89.1566 | 86.0465 | 92.5000 | 51.8072 | 37 | 6 | 37 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.0465 | 86.0465 | 86.0465 | 75.1445 | 37 | 6 | 37 | 6 | 6 | 100.0000 | |