PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 972 973 974 975 976 977 978 979 980 ... 1720 1721 » 48751-48800 / 86044 show all
gduggal-bwafb	INDEL	I16_PLUS	map_siren	*	54.1375	38.3721	91.8919	72.3881	33	53	34	3	3	100.0000
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	65.6064	54.0984	83.3333	66.0377	33	28	15	3	3	100.0000
gduggal-bwaplat	INDEL	D6_15	map_l100_m1_e0	hetalt	65.3465	48.5294	100.0000	89.8773	33	35	33	0	0
gduggal-bwaplat	INDEL	D6_15	map_l100_m2_e0	hetalt	65.3465	48.5294	100.0000	90.4348	33	35	33	0	0
gduggal-bwavard	INDEL	D1_5	map_l250_m0_e0	het	69.4737	100.0000	53.2258	97.1702	33	0	33	29	2	6.8966
eyeh-varpipe	SNP	tv	tech_badpromoters	het	63.4615	100.0000	46.4789	76.6447	33	0	33	38	0	0.0000
gduggal-bwafb	INDEL	*	map_l125_m1_e0	hetalt	90.4110	82.5000	100.0000	95.1952	33	7	16	0	0
gduggal-bwafb	INDEL	*	tech_badpromoters	homalt	98.5075	100.0000	97.0588	53.4247	33	0	33	1	1	100.0000
gduggal-bwafb	SNP	tv	tech_badpromoters	het	94.2857	100.0000	89.1892	66.6667	33	0	33	4	0	0.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	homalt	84.6154	73.3333	100.0000	54.7945	33	12	33	0	0
gduggal-bwavard	INDEL	I6_15	segdup	homalt	82.5000	70.2128	100.0000	88.7681	33	14	31	0	0
jmaeng-gatk	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	56.5789	33	0	33	0	0
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	*	83.7867	78.5714	89.7436	95.4064	33	9	35	4	1	25.0000
ltrigg-rtg1	SNP	tv	tech_badpromoters	het	92.9577	100.0000	86.8421	59.1398	33	0	33	5	0	0.0000
jpowers-varprowl	INDEL	I6_15	func_cds	*	81.4815	76.7442	86.8421	33.3333	33	10	33	5	5	100.0000
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	het	95.6522	91.6667	100.0000	89.0728	33	3	33	0	0
jli-custom	INDEL	D16_PLUS	map_siren	homalt	94.2857	97.0588	91.6667	92.7419	33	1	33	3	0	0.0000
jli-custom	INDEL	D6_15	map_l125_m1_e0	homalt	98.5075	97.0588	100.0000	87.3563	33	1	33	0	0
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.0588	94.2857	100.0000	74.2647	33	2	35	0	0
jli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	95.6522	94.2857	97.0588	82.5641	33	2	33	1	0	0.0000
jmaeng-gatk	INDEL	D16_PLUS	map_siren	homalt	92.9577	97.0588	89.1892	94.0419	33	1	33	4	0	0.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.6667	84.6154	100.0000	59.7561	33	6	33	0	0
jmaeng-gatk	INDEL	D6_15	map_l125_m1_e0	homalt	98.5075	97.0588	100.0000	89.4569	33	1	33	0	0
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.0588	94.2857	100.0000	76.1905	33	2	35	0	0
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.0588	94.2857	100.0000	92.3256	33	2	33	0	0
ltrigg-rtg1	INDEL	D6_15	map_l125_m1_e0	homalt	98.5075	97.0588	100.0000	85.3774	33	1	31	0	0
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.0588	94.2857	100.0000	94.0325	33	2	33	0	0
hfeng-pmm3	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	57.1429	33	0	33	0	0
jlack-gatk	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	56.5789	33	0	33	0	0
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.6667	84.6154	100.0000	58.7500	33	6	33	0	0
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.0588	94.2857	100.0000	93.2099	33	2	33	0	0
hfeng-pmm2	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	54.7945	33	0	33	0	0
hfeng-pmm2	INDEL	D1_5	map_l250_m0_e0	het	90.4110	100.0000	82.5000	97.1711	33	0	33	7	0	0.0000
hfeng-pmm2	INDEL	D6_15	map_l125_m1_e0	homalt	98.5075	97.0588	100.0000	87.4046	33	1	33	0	0
hfeng-pmm1	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	56.5789	33	0	33	0	0
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	85.7143	75.0000	100.0000	96.6292	33	11	33	0	0
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	91.6667	84.6154	100.0000	60.7143	33	6	33	0	0
hfeng-pmm1	INDEL	D6_15	map_l125_m1_e0	homalt	98.5075	97.0588	100.0000	86.4754	33	1	33	0	0
hfeng-pmm3	INDEL	D1_5	map_l250_m0_e0	het	95.6522	100.0000	91.6667	96.7003	33	0	33	3	0	0.0000
hfeng-pmm3	INDEL	D6_15	map_l125_m1_e0	homalt	98.5075	97.0588	100.0000	86.4754	33	1	33	0	0
jlack-gatk	INDEL	I6_15	map_l100_m1_e0	homalt	97.0588	100.0000	94.2857	87.3646	33	0	33	2	0	0.0000
jlack-gatk	INDEL	I6_15	map_l100_m2_e0	homalt	97.0588	100.0000	94.2857	88.4868	33	0	33	2	0	0.0000
jlack-gatk	INDEL	I6_15	map_l100_m2_e1	homalt	97.0588	100.0000	94.2857	88.7097	33	0	33	2	0	0.0000
jlack-gatk	SNP	tv	tech_badpromoters	het	94.2857	100.0000	89.1892	52.5641	33	0	33	4	0	0.0000
jli-custom	INDEL	*	tech_badpromoters	homalt	100.0000	100.0000	100.0000	56.5789	33	0	33	0	0
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	95.6930	94.2857	97.1429	83.7209	33	2	34	1	1	100.0000
mlin-fermikit	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	91.6667	91.6667	91.6667	70.0000	33	3	33	3	3	100.0000
mlin-fermikit	INDEL	I6_15	map_l125_m1_e0	*	71.1252	62.2642	82.9268	83.4677	33	20	34	7	6	85.7143
mlin-fermikit	INDEL	I6_15	map_l125_m2_e0	*	71.1252	62.2642	82.9268	86.1017	33	20	34	7	6	85.7143
mlin-fermikit	INDEL	I6_15	map_l125_m2_e1	*	71.1252	62.2642	82.9268	86.6013	33	20	34	7	6	85.7143

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge