PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48651-48700 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | het | 74.7082 | 62.7451 | 92.3077 | 81.8605 | 32 | 19 | 36 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 79.4045 | 68.0851 | 95.2381 | 93.5385 | 32 | 15 | 20 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.5224 | 94.1176 | 96.9697 | 91.7085 | 32 | 2 | 32 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.4865 | 91.4286 | 82.0513 | 92.3228 | 32 | 3 | 32 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 48.3871 | 32 | 1 | 32 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | tech_badpromoters | homalt | 98.4615 | 96.9697 | 100.0000 | 60.9756 | 32 | 1 | 32 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m0_e0 | het | 92.7536 | 96.9697 | 88.8889 | 96.6038 | 32 | 1 | 32 | 4 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.4865 | 76.1905 | 100.0000 | 97.2996 | 32 | 10 | 32 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 94.4056 | 32 | 0 | 32 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | tech_badpromoters | homalt | 94.2436 | 96.9697 | 91.6667 | 50.6849 | 32 | 1 | 33 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 92.7536 | 86.4865 | 100.0000 | 86.9748 | 32 | 5 | 31 | 0 | 0 | ||
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.0127 | 76.1905 | 86.4865 | 99.3583 | 32 | 10 | 32 | 5 | 2 | 40.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l150_m0_e0 | * | 96.9697 | 100.0000 | 94.1176 | 95.6242 | 32 | 0 | 32 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.2281 | 32 | 3 | 25 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.0411 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.0312 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.2141 | 32 | 1 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | homalt | 96.9697 | 94.1176 | 100.0000 | 89.5765 | 32 | 2 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.4966 | 32 | 3 | 25 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.9655 | 32 | 1 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.9687 | 32 | 1 | 32 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.2439 | 32 | 1 | 32 | 0 | 0 | ||
| dgrover-gatk | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 56.1644 | 32 | 1 | 32 | 0 | 0 | ||
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 93.5841 | 32 | 8 | 29 | 0 | 0 | ||
| ckim-vqsr | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 54.9296 | 32 | 1 | 32 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 77.8589 | 68.0851 | 90.9091 | 88.5813 | 32 | 15 | 30 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 77.0186 | 66.6667 | 91.1765 | 89.5706 | 32 | 16 | 31 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 83.1169 | 74.4186 | 94.1176 | 57.5000 | 32 | 11 | 32 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 56.9192 | 62.7451 | 52.0833 | 91.3514 | 32 | 19 | 25 | 23 | 2 | 8.6957 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 92.7536 | 88.8889 | 96.9697 | 47.6190 | 32 | 4 | 32 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 94.7967 | 32 | 0 | 32 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.2587 | 32 | 3 | 25 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.8502 | 32 | 1 | 32 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.9371 | 32 | 1 | 32 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 90.1840 | 32 | 1 | 32 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 55.5556 | 32 | 1 | 32 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | * | 63.3663 | 60.3774 | 66.6667 | 86.5079 | 32 | 21 | 34 | 17 | 6 | 35.2941 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | * | 63.3663 | 60.3774 | 66.6667 | 88.0282 | 32 | 21 | 34 | 17 | 6 | 35.2941 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e1 | * | 63.3663 | 60.3774 | 66.6667 | 88.3295 | 32 | 21 | 34 | 17 | 6 | 35.2941 | |
| astatham-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 94.8800 | 32 | 0 | 32 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5224 | 91.4286 | 100.0000 | 91.4384 | 32 | 3 | 25 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 88.6121 | 32 | 1 | 32 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.7106 | 32 | 1 | 32 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 89.9687 | 32 | 1 | 32 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | map_siren | homalt | 95.5224 | 94.1176 | 96.9697 | 95.0376 | 32 | 2 | 32 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 90.2736 | 32 | 4 | 32 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.5224 | 91.4286 | 100.0000 | 92.2892 | 32 | 3 | 32 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l250_m0_e0 | homalt | 28.4444 | 16.5803 | 100.0000 | 98.7688 | 32 | 161 | 32 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 56.1644 | 32 | 1 | 32 | 0 | 0 | ||
| anovak-vg | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 25.8065 | 0.0000 | 0.0000 | 32 | 92 | 0 | 0 | 0 | ||