PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48451-48500 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 15.3418 | 13.9640 | 17.0213 | 57.0776 | 31 | 191 | 32 | 156 | 154 | 98.7179 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 72.0930 | 70.4545 | 73.8095 | 97.7600 | 31 | 13 | 31 | 11 | 10 | 90.9091 | |
| jpowers-varprowl | INDEL | D6_15 | * | hetalt | 0.0000 | 0.3793 | 0.0000 | 0.0000 | 31 | 8143 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | HG002compoundhet | hetalt | 0.0000 | 0.3803 | 0.0000 | 0.0000 | 31 | 8120 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.3847 | 0.0000 | 0.0000 | 31 | 8028 | 0 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | HG002compoundhet | homalt | 26.1603 | 100.0000 | 15.0485 | 64.4214 | 31 | 0 | 31 | 175 | 175 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.9394 | 88.5714 | 100.0000 | 89.0625 | 31 | 4 | 28 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 85.8447 | 31 | 2 | 31 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 87.1369 | 31 | 2 | 31 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 87.6000 | 31 | 2 | 31 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l100_m2_e1 | hetalt | 98.4127 | 100.0000 | 96.8750 | 72.1739 | 31 | 0 | 31 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 82.6667 | 70.4545 | 100.0000 | 95.9420 | 31 | 13 | 28 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l150_m0_e0 | * | 98.4127 | 96.8750 | 100.0000 | 91.0920 | 31 | 1 | 31 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002compoundhet | het | 74.1304 | 65.9574 | 84.6154 | 79.8969 | 31 | 16 | 33 | 6 | 5 | 83.3333 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.3847 | 0.0000 | 0.0000 | 31 | 8028 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 75.6674 | 63.2653 | 94.1176 | 80.8989 | 31 | 18 | 32 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 82.6667 | 70.4545 | 100.0000 | 97.3368 | 31 | 13 | 31 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.8750 | 93.9394 | 100.0000 | 61.9048 | 31 | 2 | 32 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m0_e0 | * | 98.4127 | 96.8750 | 100.0000 | 92.4020 | 31 | 1 | 31 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | homalt | 16.3588 | 100.0000 | 8.9080 | 58.9623 | 31 | 0 | 31 | 317 | 315 | 99.3691 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.9394 | 93.9394 | 93.9394 | 85.8974 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.9394 | 93.9394 | 93.9394 | 87.0588 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.9394 | 93.9394 | 93.9394 | 87.3563 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | homalt | 48.8189 | 100.0000 | 32.2917 | 75.1295 | 31 | 0 | 31 | 65 | 65 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.1765 | 86.1111 | 96.8750 | 70.9091 | 31 | 5 | 31 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l100_m2_e1 | hetalt | 96.8750 | 100.0000 | 93.9394 | 83.9024 | 31 | 0 | 31 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e1 | hetalt | 98.4127 | 100.0000 | 96.8750 | 64.8352 | 31 | 0 | 31 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | hetalt | 93.9394 | 93.9394 | 93.9394 | 92.4485 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_siren | homalt | 93.9394 | 91.1765 | 96.8750 | 88.8889 | 31 | 3 | 31 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 87.2528 | 88.5714 | 85.9729 | 64.5833 | 31 | 4 | 190 | 31 | 20 | 64.5161 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.1100 | 88.5714 | 89.6552 | 88.5827 | 31 | 4 | 26 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.1111 | 75.6098 | 100.0000 | 91.5254 | 31 | 10 | 30 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l125_m1_e0 | hetalt | 87.3239 | 77.5000 | 100.0000 | 92.6941 | 31 | 9 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 83.7838 | 100.0000 | 31 | 6 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e0 | homalt | 85.2029 | 86.1111 | 84.3137 | 83.9117 | 31 | 5 | 43 | 8 | 3 | 37.5000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.4736 | 93.9394 | 97.0588 | 74.6269 | 31 | 2 | 33 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 78.1022 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 80.5195 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 80.8917 | 31 | 2 | 30 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 59.0289 | 42.4658 | 96.7742 | 72.0721 | 31 | 42 | 30 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 29.5238 | 17.3184 | 100.0000 | 39.4737 | 31 | 148 | 46 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.8101 | 60.7843 | 34.2466 | 81.0390 | 31 | 20 | 25 | 48 | 46 | 95.8333 | |
| mlin-fermikit | INDEL | I6_15 | segdup | hetalt | 81.5789 | 68.8889 | 100.0000 | 87.8906 | 31 | 14 | 31 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 76.9887 | 88.5714 | 68.0851 | 93.5351 | 31 | 4 | 32 | 15 | 14 | 93.3333 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 76.3171 | 63.2653 | 96.1538 | 23.5294 | 31 | 18 | 25 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 76.4488 | 65.9574 | 90.9091 | 92.1053 | 31 | 16 | 30 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 75.5177 | 64.5833 | 90.9091 | 92.6829 | 31 | 17 | 30 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m0_e0 | het | 92.5373 | 93.9394 | 91.1765 | 96.9479 | 31 | 2 | 31 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D1_5 | segdup | hetalt | 73.7490 | 59.6154 | 96.6667 | 97.0385 | 31 | 21 | 29 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 77.5000 | 73.8095 | 81.5789 | 99.3308 | 31 | 11 | 31 | 7 | 3 | 42.8571 | |