PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48401-48450 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | tv | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.0769 | 0.0000 | 0.0000 | 30 | 945 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 23.8908 | 17.7515 | 36.5217 | 59.5070 | 30 | 139 | 42 | 73 | 70 | 95.8904 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 66.2865 | 65.2174 | 67.3913 | 98.3922 | 30 | 16 | 31 | 15 | 3 | 20.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 26.0012 | 16.8539 | 56.8627 | 86.1789 | 30 | 148 | 29 | 22 | 16 | 72.7273 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 49.1803 | 50.8475 | 47.6190 | 48.7805 | 30 | 29 | 30 | 33 | 26 | 78.7879 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.7973 | 90.9091 | 96.8750 | 63.2184 | 30 | 3 | 31 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | HG002compoundhet | homalt | 12.7119 | 96.7742 | 6.8027 | 58.3176 | 30 | 1 | 30 | 411 | 411 | 100.0000 | |
| ckim-dragen | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.9412 | 30 | 0 | 30 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 92.3077 | 90.9091 | 93.7500 | 93.5223 | 30 | 3 | 30 | 2 | 1 | 50.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 85.7143 | 100.0000 | 93.1350 | 30 | 5 | 30 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l125_m1_e0 | hetalt | 83.1683 | 75.0000 | 93.3333 | 91.0448 | 30 | 10 | 28 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 75.3138 | 62.5000 | 94.7368 | 94.7368 | 30 | 18 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 72.5806 | 58.8235 | 94.7368 | 94.8087 | 30 | 21 | 18 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m0_e0 | het | 88.2353 | 90.9091 | 85.7143 | 95.6950 | 30 | 3 | 30 | 5 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 60.0000 | 44.1176 | 93.7500 | 72.6496 | 30 | 38 | 30 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.4059 | 50.8475 | 71.4286 | 81.4978 | 30 | 29 | 30 | 12 | 12 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 40.0000 | 40.0000 | 55.8824 | 30 | 45 | 42 | 63 | 42 | 66.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 8.2645 | 0.0000 | 0.0000 | 30 | 333 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 47.6190 | 83.3333 | 33.3333 | 88.8149 | 30 | 6 | 28 | 56 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | hetalt | 38.7454 | 26.7857 | 70.0000 | 97.4795 | 30 | 82 | 28 | 12 | 6 | 50.0000 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | hetalt | 95.2381 | 96.7742 | 93.7500 | 84.5411 | 30 | 1 | 30 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 62.6263 | 88.5714 | 48.4375 | 94.7840 | 31 | 4 | 31 | 33 | 6 | 18.1818 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 14.5882 | 86.1111 | 7.9692 | 66.8654 | 31 | 5 | 31 | 358 | 1 | 0.2793 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 36.9048 | 0.0000 | 0.0000 | 31 | 53 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 60.2673 | 45.5882 | 88.8889 | 73.5294 | 31 | 37 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 60.2673 | 45.5882 | 88.8889 | 73.5294 | 31 | 37 | 8 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 72.0930 | 68.8889 | 75.6098 | 76.1628 | 31 | 14 | 31 | 10 | 10 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.3233 | 60.7843 | 72.9730 | 93.0057 | 31 | 20 | 27 | 10 | 2 | 20.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 75.6674 | 63.2653 | 94.1176 | 81.0056 | 31 | 18 | 32 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m0_e0 | hetalt | 96.8750 | 93.9394 | 100.0000 | 91.4209 | 31 | 2 | 32 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 2.2929 | 0.0000 | 0.0000 | 31 | 1321 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | map_l250_m0_e0 | het | 71.2644 | 93.9394 | 57.4074 | 97.8296 | 31 | 2 | 31 | 23 | 2 | 8.6957 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 35.9600 | 22.9630 | 82.8571 | 58.3333 | 31 | 104 | 29 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m0_e0 | het | 94.0849 | 93.9394 | 94.2308 | 96.2509 | 31 | 2 | 49 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | homalt | 81.6539 | 83.7838 | 79.6296 | 89.2644 | 31 | 6 | 43 | 11 | 10 | 90.9091 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e0 | het | 63.9175 | 46.9697 | 100.0000 | 99.0309 | 31 | 35 | 31 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m2_e1 | het | 63.9175 | 46.9697 | 100.0000 | 99.0657 | 31 | 35 | 31 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 85.9519 | 83.7838 | 88.2353 | 61.3636 | 31 | 6 | 15 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.5221 | 0.0000 | 0.0000 | 31 | 5907 | 0 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.5902 | 31 | 0 | 31 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 54.0473 | 88.5714 | 38.8889 | 81.0526 | 31 | 4 | 21 | 33 | 10 | 30.3030 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | hetalt | 99.8192 | 100.0000 | 99.6390 | 65.8025 | 31 | 0 | 276 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 82.3529 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.8750 | 93.9394 | 100.0000 | 84.4560 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.8750 | 93.9394 | 100.0000 | 84.7716 | 31 | 2 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.5556 | 31 | 0 | 31 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.0841 | 86.1111 | 96.6667 | 86.3014 | 31 | 5 | 29 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | HG002compoundhet | homalt | 17.2702 | 100.0000 | 9.4512 | 62.3853 | 31 | 0 | 31 | 297 | 295 | 99.3266 | |