PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47701-47750 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 67.1449 | 70.2703 | 64.2857 | 89.1892 | 26 | 11 | 18 | 10 | 2 | 20.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 61.1189 | 45.6140 | 92.5926 | 99.6543 | 26 | 31 | 25 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m0_e0 | het | 80.7713 | 78.7879 | 82.8571 | 98.8267 | 26 | 7 | 29 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | func_cds | * | 67.7933 | 60.4651 | 77.1429 | 50.7042 | 26 | 17 | 27 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 38.2353 | 0.0000 | 0.0000 | 26 | 42 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 38.2353 | 0.0000 | 0.0000 | 26 | 42 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 35.6164 | 0.0000 | 0.0000 | 26 | 47 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l150_m0_e0 | * | 81.3226 | 81.2500 | 81.3953 | 92.2662 | 26 | 6 | 35 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | I6_15 | func_cds | * | 62.1299 | 60.4651 | 63.8889 | 40.0000 | 26 | 17 | 23 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m1_e0 | het | 65.6975 | 86.6667 | 52.8986 | 82.1244 | 26 | 4 | 73 | 65 | 50 | 76.9231 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e0 | het | 66.1017 | 86.6667 | 53.4247 | 82.5150 | 26 | 4 | 78 | 68 | 53 | 77.9412 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m2_e1 | het | 66.1017 | 86.6667 | 53.4247 | 82.9240 | 26 | 4 | 78 | 68 | 53 | 77.9412 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.3656 | 0.0000 | 0.0000 | 26 | 7086 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.3624 | 0.0000 | 0.0000 | 26 | 7148 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m0_e0 | * | 81.2500 | 81.2500 | 81.2500 | 95.3148 | 26 | 6 | 26 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5614 | 34.6667 | 40.9836 | 65.1429 | 26 | 49 | 25 | 36 | 31 | 86.1111 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | het | 89.6552 | 89.6552 | 89.6552 | 38.2979 | 26 | 3 | 26 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | hetalt | 41.0050 | 26.2626 | 93.4783 | 86.5103 | 26 | 73 | 43 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | * | 44.1848 | 30.2326 | 82.0513 | 68.0328 | 26 | 60 | 32 | 7 | 7 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 73.2394 | 57.7778 | 100.0000 | 57.3770 | 26 | 19 | 26 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.2798 | 0.0000 | 0.0000 | 26 | 9265 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.2798 | 0.0000 | 0.0000 | 26 | 9265 | 0 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | func_cds | het | 89.8273 | 89.6552 | 90.0000 | 47.3684 | 26 | 3 | 27 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | het | 93.2102 | 89.6552 | 97.0588 | 89.8204 | 26 | 3 | 33 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | homalt | 94.5455 | 92.8571 | 96.2963 | 92.5000 | 26 | 2 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m0_e0 | homalt | 55.9140 | 38.8060 | 100.0000 | 96.0606 | 26 | 41 | 26 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | het | 80.0000 | 66.6667 | 100.0000 | 72.3404 | 26 | 13 | 26 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m1_e0 | het | 71.2329 | 56.5217 | 96.2963 | 96.3563 | 26 | 20 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_l100_m2_e0 | het | 69.3333 | 54.1667 | 96.2963 | 96.6871 | 26 | 22 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | func_cds | het | 94.5455 | 89.6552 | 100.0000 | 62.8571 | 26 | 3 | 26 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m1_e0 | * | 92.8571 | 96.2963 | 89.6552 | 94.5386 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e0 | * | 92.8571 | 96.2963 | 89.6552 | 95.3451 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 95.4474 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_siren | hetalt | 91.2281 | 83.8710 | 100.0000 | 80.5556 | 26 | 5 | 28 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 86.8687 | 26 | 0 | 26 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m0_e0 | * | 86.6667 | 78.7879 | 96.2963 | 88.4120 | 26 | 7 | 26 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e0 | het | 59.0641 | 42.6230 | 96.1538 | 92.8177 | 26 | 35 | 25 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_l100_m2_e1 | het | 59.0641 | 42.6230 | 96.1538 | 92.8767 | 26 | 35 | 25 | 1 | 1 | 100.0000 | |
| ckim-isaac | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 66.1640 | 61.9048 | 71.0526 | 87.6623 | 26 | 16 | 27 | 11 | 5 | 45.4545 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 92.8571 | 96.2963 | 89.6552 | 96.7885 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | * | 91.2281 | 96.2963 | 86.6667 | 97.1936 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | * | 89.6552 | 92.8571 | 86.6667 | 97.2653 | 26 | 2 | 26 | 4 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_siren | homalt | 85.2459 | 76.4706 | 96.2963 | 87.8378 | 26 | 8 | 26 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_l100_m0_e0 | * | 89.6552 | 92.8571 | 86.6667 | 97.1910 | 26 | 2 | 26 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.2963 | 92.8571 | 100.0000 | 90.2622 | 26 | 2 | 26 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l250_m0_e0 | * | 71.2329 | 56.5217 | 96.2963 | 98.0519 | 26 | 20 | 26 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 35.1351 | 0.0000 | 0.0000 | 26 | 48 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 22.4849 | 18.3099 | 29.1262 | 29.9320 | 26 | 116 | 30 | 73 | 61 | 83.5616 | |