PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47451-47500 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 81.3433 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.7586 | 72.7273 | 96.0000 | 81.4815 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m1_e0 | het | 75.0000 | 80.0000 | 70.5882 | 92.6407 | 24 | 6 | 24 | 10 | 6 | 60.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e0 | het | 75.0000 | 80.0000 | 70.5882 | 93.5484 | 24 | 6 | 24 | 10 | 6 | 60.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e1 | het | 75.0000 | 80.0000 | 70.5882 | 93.6803 | 24 | 6 | 24 | 10 | 6 | 60.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 19.2870 | 17.7778 | 21.0762 | 81.7661 | 24 | 111 | 47 | 176 | 45 | 25.5682 | |
| gduggal-snapplat | INDEL | D1_5 | segdup | hetalt | 60.6593 | 46.1538 | 88.4615 | 98.5126 | 24 | 28 | 23 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 50.2732 | 40.0000 | 67.6471 | 91.9622 | 24 | 36 | 23 | 11 | 2 | 18.1818 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 18.4615 | 11.0599 | 55.8140 | 75.1445 | 24 | 193 | 24 | 19 | 14 | 73.6842 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | het | 25.8366 | 16.7832 | 56.0976 | 90.6818 | 24 | 119 | 23 | 18 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.6825 | 16.8919 | 26.6667 | 71.6981 | 25 | 123 | 20 | 55 | 29 | 52.7273 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | het | 47.0393 | 35.2113 | 70.8333 | 94.8052 | 25 | 46 | 17 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | het | 47.0393 | 35.2113 | 70.8333 | 94.8608 | 25 | 46 | 17 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | SNP | * | map_l125_m1_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 84.4660 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7220 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e1 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7769 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 53.1915 | 0.0000 | 0.0000 | 25 | 22 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 52.0833 | 0.0000 | 0.0000 | 25 | 23 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 49.0196 | 0.0000 | 0.0000 | 25 | 26 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 45.4545 | 0.0000 | 0.0000 | 25 | 30 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 48.9054 | 43.8596 | 55.2632 | 99.4833 | 25 | 32 | 21 | 17 | 14 | 82.3529 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | homalt | 80.6452 | 73.5294 | 89.2857 | 90.8497 | 25 | 9 | 25 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 51.1073 | 48.0769 | 54.5455 | 60.7143 | 25 | 27 | 12 | 10 | 8 | 80.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.6538 | 0.0000 | 0.0000 | 25 | 3799 | 0 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 84.4660 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7220 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e1 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7769 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.5461 | 0.0000 | 0.0000 | 25 | 1592 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 1.5161 | 0.0000 | 0.0000 | 25 | 1624 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 2.6388 | 1.3951 | 24.3243 | 79.2910 | 25 | 1767 | 27 | 84 | 48 | 57.1429 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 30.9742 | 18.7970 | 87.9518 | 64.6809 | 25 | 108 | 73 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 37.1824 | 23.5849 | 87.8049 | 62.7273 | 25 | 81 | 72 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | HG002compoundhet | homalt | 9.4162 | 80.6452 | 5.0000 | 41.3146 | 25 | 6 | 25 | 475 | 473 | 99.5789 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 79.3651 | 69.4444 | 92.5926 | 68.9655 | 25 | 11 | 25 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m0_e0 | * | 84.7458 | 75.7576 | 96.1538 | 87.0000 | 25 | 8 | 25 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 39.3701 | 24.5098 | 100.0000 | 62.5000 | 25 | 77 | 24 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.3631 | 0.0000 | 0.0000 | 25 | 6861 | 0 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m1_e0 | homalt | 60.9756 | 43.8596 | 100.0000 | 97.3147 | 25 | 32 | 25 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 79.3651 | 67.5676 | 96.1538 | 69.7674 | 25 | 12 | 25 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e1 | homalt | 80.6452 | 67.5676 | 100.0000 | 89.7119 | 25 | 12 | 25 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 37.5940 | 23.1481 | 100.0000 | 88.3178 | 25 | 83 | 25 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 71.4286 | 60.9756 | 86.2069 | 85.2041 | 25 | 16 | 25 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.7018 | 25 | 20 | 25 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 80.6452 | 69.4444 | 96.1538 | 77.9661 | 25 | 11 | 25 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 71.4286 | 56.8182 | 96.1538 | 82.0690 | 25 | 19 | 25 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 91.0394 | 25 | 18 | 25 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 91.0394 | 25 | 18 | 25 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 61.5224 | 45.4545 | 95.1613 | 80.3175 | 25 | 30 | 59 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 48.6766 | 60.9756 | 40.5063 | 39.2308 | 25 | 16 | 96 | 141 | 140 | 99.2908 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | * | 82.7852 | 75.7576 | 91.2500 | 78.7798 | 25 | 8 | 73 | 7 | 5 | 71.4286 | |