PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47351-47400 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m2_e0 | * | 90.5660 | 88.8889 | 92.3077 | 92.2619 | 24 | 3 | 24 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | * | 87.2727 | 85.7143 | 88.8889 | 92.1053 | 24 | 4 | 24 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D6_15 | HG002compoundhet | homalt | 32.0000 | 100.0000 | 19.0476 | 60.3774 | 24 | 0 | 24 | 102 | 76 | 74.5098 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.9592 | 100.0000 | 96.0000 | 87.9808 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | HG002compoundhet | homalt | 47.5248 | 100.0000 | 31.1688 | 71.0526 | 24 | 0 | 24 | 53 | 52 | 98.1132 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.5660 | 96.0000 | 85.7143 | 92.3706 | 24 | 1 | 24 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 94.1176 | 92.3077 | 96.0000 | 95.1644 | 24 | 2 | 24 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 92.3077 | 92.3077 | 92.3077 | 95.7025 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 92.3077 | 92.3077 | 92.3077 | 95.7237 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 95.9664 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 54.5455 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | HG002compoundhet | homalt | 51.0638 | 100.0000 | 34.2857 | 66.3462 | 24 | 0 | 24 | 46 | 45 | 97.8261 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 91.3043 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 94.1964 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 94.8177 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 94.8473 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 95.1120 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 36.8421 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.0000 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.0000 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 53.7037 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.0843 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.7576 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.7576 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.1655 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 96.1194 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4613 | 24 | 2 | 24 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.4752 | 24 | 2 | 24 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 44.1860 | 24 | 0 | 24 | 0 | 0 | ||
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.1905 | 100.0000 | 61.5385 | 74.6753 | 24 | 0 | 24 | 15 | 15 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 87.2727 | 88.8889 | 85.7143 | 96.1433 | 24 | 3 | 24 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.0000 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.0000 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l250_m0_e0 | homalt | 94.1176 | 96.0000 | 92.3077 | 96.7296 | 24 | 1 | 24 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 77.3913 | 24 | 6 | 26 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | map_l250_m0_e0 | homalt | 94.1176 | 96.0000 | 92.3077 | 96.9376 | 24 | 1 | 24 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | HG002compoundhet | homalt | 53.3333 | 100.0000 | 36.3636 | 67.8049 | 24 | 0 | 24 | 42 | 42 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 24 | 0 | 24 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 94.7581 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 92.3077 | 92.3077 | 92.3077 | 95.4783 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 92.3077 | 92.3077 | 92.3077 | 95.5017 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 95.5140 | 24 | 0 | 24 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | HG002compoundhet | homalt | 19.5122 | 100.0000 | 10.8108 | 46.5060 | 24 | 0 | 24 | 198 | 197 | 99.4949 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 91.4191 | 24 | 0 | 24 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.7085 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.9592 | 96.0000 | 100.0000 | 42.2222 | 24 | 1 | 26 | 0 | 0 | ||