PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47201-47250 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 35.7447 | 85.7143 | 22.5806 | 94.7487 | 24 | 4 | 21 | 72 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 80.7692 | 75.0000 | 87.5000 | 96.5517 | 24 | 8 | 28 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e0 | homalt | 85.7143 | 85.7143 | 85.7143 | 89.1473 | 24 | 4 | 24 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I6_15 | func_cds | het | 77.4194 | 100.0000 | 63.1579 | 33.3333 | 24 | 0 | 24 | 14 | 2 | 14.2857 | |
| raldana-dualsentieon | INDEL | * | map_l250_m0_e0 | homalt | 97.9592 | 96.0000 | 100.0000 | 96.8545 | 24 | 1 | 24 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | segdup | het | 96.2963 | 100.0000 | 92.8571 | 94.2505 | 24 | 0 | 26 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m0_e0 | * | 97.9592 | 100.0000 | 96.0000 | 97.8485 | 24 | 0 | 24 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 24 | 0 | 24 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e1 | * | 92.3077 | 88.8889 | 96.0000 | 94.3439 | 24 | 3 | 24 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 76.1905 | 61.5385 | 100.0000 | 64.7059 | 24 | 15 | 24 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 81.3559 | 68.5714 | 100.0000 | 76.1905 | 24 | 11 | 25 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | func_cds | het | 97.9592 | 100.0000 | 96.0000 | 37.5000 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l250_m0_e0 | homalt | 97.9592 | 96.0000 | 100.0000 | 97.3333 | 24 | 1 | 24 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | HG002compoundhet | homalt | 18.1818 | 100.0000 | 10.0000 | 54.4592 | 24 | 0 | 24 | 216 | 151 | 69.9074 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.9592 | 100.0000 | 96.0000 | 88.4793 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 34.2857 | 24 | 0 | 23 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.5676 | 24 | 0 | 24 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6264 | 24 | 0 | 24 | 0 | 0 | ||
| jli-custom | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6264 | 24 | 0 | 24 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.5248 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 49.7306 | 39.3443 | 67.5676 | 84.2553 | 24 | 37 | 25 | 12 | 11 | 91.6667 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 56.4706 | 58.5366 | 54.5455 | 79.5349 | 24 | 17 | 24 | 20 | 19 | 95.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 78.0702 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 80.4688 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.7586 | 72.7273 | 96.0000 | 80.6202 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 32.3529 | 24 | 0 | 23 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 80.3022 | 68.5714 | 96.8750 | 88.4058 | 24 | 11 | 31 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 24 | 0 | 24 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 24 | 0 | 24 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 24 | 0 | 24 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | HG002compoundhet | homalt | 40.0000 | 100.0000 | 25.0000 | 72.0117 | 24 | 0 | 24 | 72 | 72 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 93.6842 | 24 | 0 | 24 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 56.1404 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 85.7143 | 100.0000 | 75.0000 | 75.9398 | 24 | 0 | 24 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 87.2727 | 80.0000 | 96.0000 | 89.8785 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 87.2727 | 80.0000 | 96.0000 | 90.9747 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 87.2727 | 80.0000 | 96.0000 | 91.1348 | 24 | 6 | 24 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | HG002compoundhet | homalt | 26.0870 | 100.0000 | 15.0000 | 70.0375 | 24 | 0 | 24 | 136 | 135 | 99.2647 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 91.8239 | 24 | 0 | 24 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 96.0606 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4380 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.4520 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 62.6866 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | func_cds | het | 97.9592 | 100.0000 | 96.0000 | 44.4444 | 24 | 0 | 24 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 80.0000 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | HG002compoundhet | homalt | 27.1186 | 100.0000 | 15.6863 | 70.9677 | 24 | 0 | 24 | 129 | 129 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 92.1311 | 24 | 0 | 24 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 96.3470 | 24 | 0 | 24 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 61.5385 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 38.4615 | 24 | 0 | 24 | 0 | 0 | ||