PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45601-45650 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 89.4737 | 18 | 1 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 45.4545 | 18 | 1 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 95.1743 | 18 | 0 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 91.9643 | 18 | 1 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 92.1397 | 18 | 1 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 97.8261 | 18 | 9 | 18 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | homalt | 75.0000 | 69.2308 | 81.8182 | 89.0000 | 18 | 8 | 18 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | homalt | 54.5455 | 40.0000 | 85.7143 | 93.6937 | 18 | 27 | 18 | 3 | 3 | 100.0000 | |
| mlin-fermikit | SNP | * | map_l100_m2_e1 | hetalt | 59.0164 | 41.8605 | 100.0000 | 70.9677 | 18 | 25 | 18 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m2_e1 | hetalt | 59.0164 | 41.8605 | 100.0000 | 70.9677 | 18 | 25 | 18 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 91.8182 | 18 | 1 | 18 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 69.2308 | 94.7368 | 94.8925 | 18 | 8 | 18 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 49.0231 | 85.7143 | 34.3284 | 99.8804 | 18 | 3 | 23 | 44 | 2 | 4.5455 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.3077 | 90.0000 | 94.7368 | 99.2146 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 93.5943 | 18 | 3 | 18 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.3574 | 18 | 3 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 67.2727 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2973 | 94.7368 | 100.0000 | 79.3478 | 18 | 1 | 19 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 72.5806 | 18 | 8 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 72.5806 | 18 | 8 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 33.3333 | 18 | 1 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 87.7698 | 18 | 1 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 88.5135 | 18 | 1 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 88.8158 | 18 | 2 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m1_e0 | * | 100.0000 | 100.0000 | 100.0000 | 94.1558 | 18 | 0 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 78.1609 | 66.6667 | 94.4444 | 77.5000 | 18 | 9 | 17 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 79.7784 | 69.2308 | 94.1176 | 78.4810 | 18 | 8 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 79.7784 | 69.2308 | 94.1176 | 81.1111 | 18 | 8 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 79.7784 | 69.2308 | 94.1176 | 81.1111 | 18 | 8 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | segdup | homalt | 97.2973 | 94.7368 | 100.0000 | 85.9504 | 18 | 1 | 17 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 95.7627 | 18 | 1 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 97.2973 | 94.7368 | 100.0000 | 95.7983 | 18 | 1 | 20 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 67.2727 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 71.4286 | 18 | 2 | 18 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 54.1353 | 90.0000 | 38.7097 | 94.2056 | 18 | 2 | 24 | 38 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 52.3636 | 90.0000 | 36.9231 | 94.2376 | 18 | 2 | 24 | 41 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 52.7550 | 90.0000 | 37.3134 | 94.1434 | 18 | 2 | 25 | 42 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 39.1304 | 25.3521 | 85.7143 | 57.1429 | 18 | 53 | 18 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 78.2609 | 64.2857 | 100.0000 | 80.4878 | 18 | 10 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 78.2609 | 100.0000 | 18 | 5 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.8101 | 18 | 3 | 15 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 96.3768 | 18 | 3 | 15 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.2475 | 66.6667 | 86.3636 | 89.8148 | 18 | 9 | 19 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 89.6047 | 94.7368 | 85.0000 | 97.3510 | 18 | 1 | 17 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 83.4862 | 18 | 1 | 18 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 86.0465 | 18 | 1 | 18 | 0 | 0 | ||