PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45251-45300 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.1176 | 88.8889 | 100.0000 | 92.3810 | 16 | 2 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.1176 | 88.8889 | 100.0000 | 92.4528 | 16 | 2 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 96.9697 | 94.1176 | 100.0000 | 91.8367 | 16 | 1 | 16 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | map_l100_m0_e0 | hetalt | 96.9697 | 100.0000 | 94.1176 | 64.5833 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | hetalt | 96.9697 | 100.0000 | 94.1176 | 64.5833 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 82.0513 | 80.0000 | 84.2105 | 99.9474 | 16 | 4 | 16 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 91.4286 | 84.2105 | 100.0000 | 62.7451 | 16 | 3 | 19 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 96.9697 | 94.1176 | 100.0000 | 94.1392 | 16 | 1 | 16 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.1176 | 88.8889 | 100.0000 | 94.2238 | 16 | 2 | 16 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | tech_badpromoters | * | 94.1176 | 94.1176 | 94.1176 | 54.0541 | 16 | 1 | 16 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 94.1176 | 88.8889 | 100.0000 | 74.2424 | 16 | 2 | 17 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 75.3846 | 16 | 0 | 16 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 72.7273 | 59.2593 | 94.1176 | 90.7609 | 16 | 11 | 16 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 72.1311 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 91.4286 | 88.8889 | 94.1176 | 73.0159 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 91.4286 | 88.8889 | 94.1176 | 76.7123 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 91.4286 | 88.8889 | 94.1176 | 76.7123 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | hetalt | 91.4286 | 100.0000 | 84.2105 | 84.6774 | 16 | 0 | 16 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 7.0640 | 3.6613 | 100.0000 | 80.0000 | 16 | 421 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | homalt | 59.7865 | 44.4444 | 91.3043 | 78.7037 | 16 | 20 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | homalt | 58.6900 | 43.2432 | 91.3043 | 78.8991 | 16 | 21 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | het | 68.5015 | 94.1176 | 53.8462 | 81.9757 | 16 | 1 | 56 | 48 | 36 | 75.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 55.5669 | 45.7143 | 70.8333 | 96.2848 | 16 | 19 | 17 | 7 | 2 | 28.5714 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 39.0244 | 69.5652 | 97.8976 | 16 | 25 | 16 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002compoundhet | het | 7.2324 | 3.9506 | 42.7184 | 52.9680 | 16 | 389 | 44 | 59 | 35 | 59.3220 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 4.6990 | 2.6273 | 22.2222 | 79.1506 | 16 | 593 | 24 | 84 | 48 | 57.1429 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 47.8632 | 36.3636 | 70.0000 | 84.6154 | 16 | 28 | 7 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | hetalt | 21.5440 | 12.9032 | 65.2174 | 98.3076 | 16 | 108 | 15 | 8 | 5 | 62.5000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 51.0251 | 48.4848 | 53.8462 | 69.0476 | 16 | 17 | 7 | 6 | 6 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 82.0513 | 84.2105 | 80.0000 | 94.5848 | 16 | 3 | 12 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 82.0513 | 84.2105 | 80.0000 | 94.6043 | 16 | 3 | 12 | 3 | 1 | 33.3333 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m0_e0 | * | 48.0801 | 34.0426 | 81.8182 | 97.4713 | 16 | 31 | 9 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | het | 45.7143 | 34.7826 | 66.6667 | 96.1340 | 16 | 30 | 10 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | het | 45.0704 | 34.0426 | 66.6667 | 96.1637 | 16 | 31 | 10 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 11.5108 | 7.7670 | 22.2222 | 93.9481 | 16 | 190 | 14 | 49 | 4 | 8.1633 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 99.2416 | 16 | 8 | 16 | 4 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 76.7278 | 76.1905 | 77.2727 | 99.9025 | 16 | 5 | 17 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | het | 72.7273 | 84.2105 | 64.0000 | 97.6460 | 16 | 3 | 16 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | * | 86.4865 | 94.1176 | 80.0000 | 98.5653 | 16 | 1 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | het | 88.8889 | 100.0000 | 80.0000 | 97.8094 | 16 | 0 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | * | 84.2105 | 88.8889 | 80.0000 | 98.5735 | 16 | 2 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | het | 88.8889 | 100.0000 | 80.0000 | 97.8237 | 16 | 0 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_siren | homalt | 64.0000 | 47.0588 | 100.0000 | 97.5309 | 16 | 18 | 16 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l250_m1_e0 | * | 88.8889 | 88.8889 | 88.8889 | 97.3174 | 16 | 2 | 16 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | HG002compoundhet | het | 4.7472 | 34.0426 | 2.5515 | 55.6957 | 16 | 31 | 26 | 993 | 986 | 99.2951 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 39.0244 | 34.0426 | 45.7143 | 78.5276 | 16 | 31 | 16 | 19 | 18 | 94.7368 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | * | 66.6667 | 61.5385 | 72.7273 | 84.7222 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | * | 66.6667 | 61.5385 | 72.7273 | 86.8263 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | * | 66.6667 | 61.5385 | 72.7273 | 86.9048 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8870 | 16 | 0 | 16 | 0 | 0 | ||