PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44851-44900 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | hetalt | 93.7500 | 93.7500 | 93.7500 | 91.5344 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 13.6364 | 100.0000 | 7.3171 | 82.8308 | 15 | 0 | 15 | 190 | 8 | 4.2105 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 13.6364 | 100.0000 | 7.3171 | 82.8308 | 15 | 0 | 15 | 190 | 8 | 4.2105 | |
| gduggal-snapfb | SNP | tv | map_l100_m0_e0 | hetalt | 93.7500 | 93.7500 | 93.7500 | 91.5344 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 20.8696 | 12.0000 | 80.0000 | 51.2195 | 15 | 110 | 16 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 73.1707 | 71.4286 | 75.0000 | 37.5000 | 15 | 6 | 15 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 83.1234 | 88.2353 | 78.5714 | 94.2857 | 15 | 2 | 11 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 35.4132 | 25.4237 | 58.3333 | 64.1791 | 15 | 44 | 14 | 10 | 10 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l150_m1_e0 | hetalt | 76.9231 | 75.0000 | 78.9474 | 88.6228 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l150_m2_e0 | hetalt | 76.9231 | 75.0000 | 78.9474 | 90.2062 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l150_m2_e1 | hetalt | 76.9231 | 75.0000 | 78.9474 | 90.2564 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 83.7209 | 15 | 3 | 15 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 86.0000 | 15 | 3 | 15 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 86.0927 | 15 | 3 | 15 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m0_e0 | het | 88.2353 | 100.0000 | 78.9474 | 98.8527 | 15 | 0 | 15 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m2_e1 | * | 61.2245 | 55.5556 | 68.1818 | 95.6693 | 15 | 12 | 15 | 7 | 6 | 85.7143 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 39.4737 | 27.2727 | 71.4286 | 84.6715 | 15 | 40 | 15 | 6 | 2 | 33.3333 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 44.7761 | 28.8462 | 100.0000 | 76.3636 | 15 | 37 | 13 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | map_l150_m1_e0 | hetalt | 76.9231 | 75.0000 | 78.9474 | 88.6228 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e0 | hetalt | 76.9231 | 75.0000 | 78.9474 | 90.2062 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m2_e1 | hetalt | 76.9231 | 75.0000 | 78.9474 | 90.2564 | 15 | 5 | 15 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | homalt | 59.4059 | 44.1176 | 90.9091 | 79.0476 | 15 | 19 | 20 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 8.3799 | 0.0000 | 0.0000 | 15 | 164 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | * | 68.3012 | 68.1818 | 68.4211 | 53.6585 | 15 | 7 | 13 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e1 | het | 65.2174 | 93.7500 | 50.0000 | 88.5093 | 15 | 1 | 37 | 37 | 29 | 78.3784 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.3582 | 78.9474 | 77.7778 | 97.5577 | 15 | 4 | 14 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 93.7500 | 93.7500 | 93.7500 | 96.9052 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 93.7500 | 93.7500 | 93.7500 | 96.9349 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 90.9091 | 83.3333 | 100.0000 | 97.6366 | 15 | 3 | 16 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 85.7143 | 83.3333 | 88.2353 | 95.0147 | 15 | 3 | 15 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 85.7143 | 83.3333 | 88.2353 | 95.7393 | 15 | 3 | 15 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 85.7143 | 83.3333 | 88.2353 | 95.7500 | 15 | 3 | 15 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.0968 | 15 | 1 | 16 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 44.7761 | 100.0000 | 28.8462 | 82.9508 | 15 | 0 | 15 | 37 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 44.7761 | 100.0000 | 28.8462 | 82.9508 | 15 | 0 | 15 | 37 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 76.9231 | 100.0000 | 62.5000 | 94.2721 | 15 | 0 | 15 | 9 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e1 | hetalt | 51.7241 | 34.8837 | 100.0000 | 90.7407 | 15 | 28 | 15 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.7143 | 93.7500 | 78.9474 | 97.3501 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6071 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6071 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.9016 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 96.7742 | 93.7500 | 100.0000 | 97.8510 | 15 | 1 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6071 | 15 | 0 | 15 | 0 | 0 | ||
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.6071 | 15 | 0 | 15 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 96.7742 | 93.7500 | 100.0000 | 99.8973 | 15 | 1 | 15 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.6636 | 15 | 0 | 15 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.0968 | 15 | 1 | 16 | 0 | 0 | ||