PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44351-44400 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I6_15 | map_l150_m1_e0 | het | 63.8563 | 93.3333 | 48.5294 | 87.8571 | 14 | 1 | 33 | 35 | 27 | 77.1429 | |
| gduggal-snapvard | INDEL | I6_15 | map_l150_m2_e0 | het | 64.5327 | 93.3333 | 49.3151 | 88.3013 | 14 | 1 | 36 | 37 | 29 | 78.3784 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 37.3333 | 53.8462 | 28.5714 | 97.4833 | 14 | 12 | 14 | 35 | 1 | 2.8571 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | * | 84.8485 | 93.3333 | 77.7778 | 98.6686 | 14 | 1 | 14 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.9429 | 14 | 0 | 14 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D1_5 | tech_badpromoters | * | 73.6842 | 73.6842 | 73.6842 | 48.6486 | 14 | 5 | 14 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 11.9658 | 93.3333 | 6.3927 | 89.8892 | 14 | 1 | 14 | 205 | 4 | 1.9512 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 4.3344 | 87.5000 | 2.2222 | 78.2983 | 14 | 2 | 14 | 616 | 3 | 0.4870 | |
| gduggal-snapfb | SNP | ti | map_l150_m1_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 88.4615 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e0 | hetalt | 93.3333 | 93.3333 | 93.3333 | 89.2086 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l150_m2_e1 | hetalt | 93.3333 | 93.3333 | 93.3333 | 89.2086 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | * | 85.1927 | 82.3529 | 88.2353 | 90.6593 | 14 | 3 | 15 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.3226 | 87.5000 | 93.3333 | 85.7143 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e1 | * | 82.6772 | 77.7778 | 88.2353 | 90.7104 | 14 | 4 | 15 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.3226 | 87.5000 | 93.3333 | 85.7143 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | het | 96.7742 | 100.0000 | 93.7500 | 94.3662 | 14 | 0 | 15 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | het | 96.7742 | 100.0000 | 93.7500 | 94.4828 | 14 | 0 | 15 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | hetalt | 44.4444 | 28.5714 | 100.0000 | 93.0147 | 14 | 35 | 19 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 11.8946 | 6.7961 | 47.6190 | 65.8537 | 14 | 192 | 20 | 22 | 20 | 90.9091 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 21.6364 | 12.9630 | 65.3846 | 59.3750 | 14 | 94 | 17 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 48.5484 | 60.8696 | 40.3756 | 32.1656 | 14 | 9 | 86 | 127 | 125 | 98.4252 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 50.5670 | 63.6364 | 41.9512 | 31.6667 | 14 | 8 | 86 | 119 | 118 | 99.1597 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 83.4862 | 73.6842 | 96.2963 | 92.3944 | 14 | 5 | 26 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 83.4862 | 73.6842 | 96.2963 | 92.5000 | 14 | 5 | 26 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I6_15 | func_cds | homalt | 96.5517 | 93.3333 | 100.0000 | 22.2222 | 14 | 1 | 14 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 35.1538 | 58.3333 | 25.1572 | 36.4000 | 14 | 10 | 40 | 119 | 113 | 94.9580 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 50.3311 | 40.0000 | 67.8571 | 62.1622 | 14 | 21 | 38 | 18 | 17 | 94.4444 | |
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.2712 | 14 | 0 | 14 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 71.7949 | 56.0000 | 100.0000 | 51.7241 | 14 | 11 | 14 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 66.6667 | 50.0000 | 100.0000 | 65.8537 | 14 | 14 | 14 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | het | 44.4444 | 28.5714 | 100.0000 | 92.6702 | 14 | 35 | 14 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.4429 | 34.1463 | 83.3333 | 97.1246 | 14 | 27 | 15 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | hetalt | 47.4576 | 31.1111 | 100.0000 | 91.1243 | 14 | 31 | 15 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.8705 | 14 | 0 | 113 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 71.7949 | 56.0000 | 100.0000 | 0.0000 | 14 | 11 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 84.8485 | 73.6842 | 100.0000 | 82.6087 | 14 | 5 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e0 | het | 96.7742 | 100.0000 | 93.7500 | 94.4251 | 14 | 0 | 15 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e1 | het | 96.7742 | 100.0000 | 93.7500 | 94.5392 | 14 | 0 | 15 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 57.1429 | 40.0000 | 100.0000 | 68.4211 | 14 | 21 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l250_m0_e0 | het | 93.3333 | 93.3333 | 93.3333 | 97.7941 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | func_cds | homalt | 96.5517 | 93.3333 | 100.0000 | 26.3158 | 14 | 1 | 14 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 93.3333 | 93.3333 | 93.3333 | 95.5090 | 14 | 1 | 14 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.2574 | 0.0000 | 0.0000 | 14 | 5424 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.5460 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e1 | het | 93.3333 | 100.0000 | 87.5000 | 97.5904 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | tech_badpromoters | * | 84.8485 | 82.3529 | 87.5000 | 57.8947 | 14 | 3 | 14 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 60.7229 | 93.3333 | 45.0000 | 76.4706 | 14 | 1 | 18 | 22 | 21 | 95.4545 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | hetalt | 76.5957 | 66.6667 | 90.0000 | 96.6102 | 14 | 7 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | hetalt | 76.5957 | 66.6667 | 90.0000 | 97.0760 | 14 | 7 | 9 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 96.6903 | 14 | 1 | 14 | 0 | 0 | ||