PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44251-44300 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.2652 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 96.5517 | 93.3333 | 100.0000 | 95.6656 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.5455 | 14 | 0 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 73.6842 | 0.0000 | 0.0000 | 14 | 5 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l150_m1_e0 | * | 62.5698 | 93.3333 | 47.0588 | 97.6918 | 14 | 1 | 16 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.6849 | 56.0000 | 63.8889 | 83.7838 | 14 | 11 | 23 | 13 | 5 | 38.4615 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 65.6250 | 58.3333 | 75.0000 | 80.1418 | 14 | 10 | 21 | 7 | 2 | 28.5714 | |
| qzeng-custom | INDEL | I6_15 | func_cds | homalt | 84.8485 | 93.3333 | 77.7778 | 25.0000 | 14 | 1 | 14 | 4 | 1 | 25.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 87.6827 | 82.3529 | 93.7500 | 99.9627 | 14 | 3 | 15 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m1_e0 | het | 96.5517 | 100.0000 | 93.3333 | 90.7975 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m2_e0 | het | 96.5517 | 100.0000 | 93.3333 | 96.0317 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l250_m2_e1 | het | 96.5517 | 100.0000 | 93.3333 | 96.1340 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.5000 | 77.7778 | 100.0000 | 78.9474 | 14 | 4 | 16 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.3333 | 93.3333 | 93.3333 | 90.2597 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.9245 | 14 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 93.1507 | 14 | 0 | 15 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5517 | 93.3333 | 100.0000 | 65.9574 | 14 | 1 | 16 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 93.3333 | 87.5000 | 100.0000 | 68.4211 | 14 | 2 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 84.6512 | 77.7778 | 92.8571 | 70.8333 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 84.6512 | 77.7778 | 92.8571 | 73.0769 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 84.6512 | 77.7778 | 92.8571 | 73.0769 | 14 | 4 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | homalt | 73.6842 | 66.6667 | 82.3529 | 70.6897 | 14 | 7 | 14 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l100_m0_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 64.1026 | 14 | 2 | 14 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 50.9091 | 51.8519 | 50.0000 | 88.3929 | 14 | 13 | 13 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 83.1683 | 93.3333 | 75.0000 | 80.5825 | 14 | 1 | 15 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e1 | * | 61.3139 | 51.8519 | 75.0000 | 90.5213 | 14 | 13 | 15 | 5 | 4 | 80.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.5517 | 93.3333 | 100.0000 | 85.5670 | 14 | 1 | 14 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.5517 | 93.3333 | 100.0000 | 85.5670 | 14 | 1 | 14 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.5517 | 93.3333 | 100.0000 | 85.5670 | 14 | 1 | 14 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.5517 | 93.3333 | 100.0000 | 85.5670 | 14 | 1 | 14 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 57.1429 | 53.8462 | 60.8696 | 96.6667 | 14 | 12 | 14 | 9 | 6 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 75.6757 | 60.8696 | 100.0000 | 71.4286 | 14 | 9 | 14 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | homalt | 73.6842 | 66.6667 | 82.3529 | 88.5135 | 14 | 7 | 14 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m0_e0 | * | 93.3333 | 93.3333 | 93.3333 | 93.6709 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 79.1667 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 79.1667 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.6102 | 14 | 7 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 96.5517 | 14 | 7 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | map_l100_m0_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 64.1026 | 14 | 2 | 14 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.6757 | 82.3529 | 70.0000 | 99.3709 | 14 | 3 | 14 | 6 | 3 | 50.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.8519 | 93.3333 | 35.8974 | 93.7898 | 14 | 1 | 14 | 25 | 7 | 28.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m1_e0 | het | 68.2927 | 70.0000 | 66.6667 | 92.8328 | 14 | 6 | 14 | 7 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e0 | het | 66.6667 | 70.0000 | 63.6364 | 93.7500 | 14 | 6 | 14 | 8 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e1 | het | 65.1163 | 70.0000 | 60.8696 | 93.5754 | 14 | 6 | 14 | 9 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 78.0822 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 77.7778 | 63.6364 | 100.0000 | 80.7229 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 77.7778 | 63.6364 | 100.0000 | 81.6092 | 14 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 61.1354 | 51.8519 | 74.4681 | 94.2402 | 14 | 13 | 35 | 12 | 2 | 16.6667 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 96.5517 | 93.3333 | 100.0000 | 95.5836 | 14 | 1 | 14 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 87.5000 | 73.6842 | 97.7778 | 14 | 2 | 14 | 5 | 0 | 0.0000 | |