PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44101-44150 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 76.4706 | 81.2500 | 72.2222 | 91.8552 | 13 | 3 | 13 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 76.4706 | 81.2500 | 72.2222 | 91.8919 | 13 | 3 | 13 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m1_e0 | het | 87.2902 | 92.8571 | 82.3529 | 94.3333 | 13 | 1 | 14 | 3 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 40.0000 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 92.8571 | 0.0000 | 0.0000 | 13 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 13 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0721 | 13 | 0 | 13 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 13 | 0 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | HG002compoundhet | homalt | 40.0881 | 54.1667 | 31.8182 | 65.3543 | 13 | 11 | 14 | 30 | 29 | 96.6667 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m2_e1 | het | 42.6230 | 27.6596 | 92.8571 | 96.3542 | 13 | 34 | 13 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 61.9048 | 48.1481 | 86.6667 | 86.6071 | 13 | 14 | 13 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | func_cds | homalt | 92.8571 | 86.6667 | 100.0000 | 31.5789 | 13 | 2 | 13 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.7778 | 48.1481 | 72.2222 | 96.3710 | 13 | 14 | 13 | 5 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | map_l100_m1_e0 | hetalt | 48.1481 | 31.7073 | 100.0000 | 94.6058 | 13 | 28 | 13 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 50.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 89.6552 | 92.8571 | 86.6667 | 96.5675 | 13 | 1 | 13 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 96.2963 | 100.0000 | 92.8571 | 87.5000 | 13 | 0 | 13 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 58.3333 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.4560 | 13 | 0 | 13 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.2500 | 86.6667 | 76.4706 | 96.2637 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 31.5789 | 13 | 0 | 13 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 45.8333 | 13 | 0 | 13 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 95.4545 | 13 | 2 | 13 | 0 | 0 | ||
| egarrison-hhga | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 95.6376 | 13 | 2 | 13 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 72.2222 | 56.5217 | 100.0000 | 72.3404 | 13 | 10 | 13 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 13 | 0 | 14 | 0 | 0 | ||
| dgrover-gatk | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 69.7674 | 13 | 0 | 13 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.5128 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.9064 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 50.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 96.2963 | 100.0000 | 92.8571 | 87.5000 | 13 | 0 | 13 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 60.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.8571 | 86.6667 | 100.0000 | 89.5161 | 13 | 2 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 13 | 0 | 14 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l250_m0_e0 | het | 81.2500 | 86.6667 | 76.4706 | 98.9875 | 13 | 2 | 13 | 4 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 67.5000 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | map_l125_m0_e0 | * | 92.8571 | 86.6667 | 100.0000 | 96.5333 | 13 | 2 | 13 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-vqsr | SNP | * | map_l100_m1_e0 | hetalt | 48.1481 | 31.7073 | 100.0000 | 94.6058 | 13 | 28 | 13 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | het | 86.6667 | 86.6667 | 86.6667 | 98.2639 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.8571 | 13 | 0 | 13 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 80.2817 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.6667 | 81.2500 | 92.8571 | 96.5432 | 13 | 3 | 13 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l150_m1_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 80.3030 | 13 | 2 | 13 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l150_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 83.5443 | 13 | 2 | 13 | 0 | 0 | ||