PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43851-43900 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 32.0988 | 19.1176 | 100.0000 | 99.4775 | 13 | 55 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.8649 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m0_e0 | het | 56.5217 | 39.3939 | 100.0000 | 99.4522 | 13 | 20 | 13 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.4847 | 0.0000 | 0.0000 | 13 | 2669 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m1_e0 | * | 74.2857 | 86.6667 | 65.0000 | 95.8932 | 13 | 2 | 13 | 7 | 2 | 28.5714 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m1_e0 | het | 78.7879 | 92.8571 | 68.4211 | 95.6322 | 13 | 1 | 13 | 6 | 1 | 16.6667 | |
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | * | 64.5598 | 68.4211 | 61.1111 | 50.0000 | 13 | 6 | 11 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.2724 | 0.0000 | 0.0000 | 13 | 4759 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | map_l250_m0_e0 | het | 83.8710 | 86.6667 | 81.2500 | 98.8131 | 13 | 2 | 13 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | * | hetalt | 0.0000 | 0.1520 | 0.0000 | 0.0000 | 13 | 8538 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | HG002complexvar | hetalt | 0.0000 | 1.0630 | 0.0000 | 0.0000 | 13 | 1210 | 0 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 36.3636 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.7879 | 68.4211 | 92.8571 | 86.4078 | 13 | 6 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e0 | * | 83.8710 | 76.4706 | 92.8571 | 91.5663 | 13 | 4 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e0 | het | 89.6552 | 81.2500 | 100.0000 | 85.5556 | 13 | 3 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e1 | * | 81.2500 | 72.2222 | 92.8571 | 91.7160 | 13 | 5 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e1 | het | 89.6552 | 81.2500 | 100.0000 | 85.7143 | 13 | 3 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 86.6667 | 100.0000 | 76.4706 | 60.4651 | 13 | 0 | 13 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0882 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.4651 | 56.5217 | 65.0000 | 70.1493 | 13 | 10 | 13 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 65.0000 | 59.0909 | 72.2222 | 68.4211 | 13 | 9 | 13 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 49.3103 | 37.1429 | 73.3333 | 75.4098 | 13 | 22 | 11 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 85.5670 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 11.2554 | 6.1611 | 65.0000 | 68.2540 | 13 | 198 | 13 | 7 | 4 | 57.1429 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.7879 | 68.4211 | 92.8571 | 87.8261 | 13 | 6 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 42.6230 | 100.0000 | 27.0833 | 34.2466 | 13 | 0 | 13 | 35 | 31 | 88.5714 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m0_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 97.5506 | 13 | 0 | 22 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 40.9449 | 27.6596 | 78.7879 | 64.1304 | 13 | 34 | 26 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | segdup | homalt | 81.2500 | 68.4211 | 100.0000 | 81.1594 | 13 | 6 | 13 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 85.1296 | 76.4706 | 96.0000 | 92.3077 | 13 | 4 | 24 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.6207 | 13 | 0 | 12 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | het | 81.4747 | 76.4706 | 87.1795 | 78.5714 | 13 | 4 | 34 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 96.2963 | 100.0000 | 92.8571 | 83.5294 | 13 | 0 | 13 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 55.8824 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 92.8571 | 86.6667 | 100.0000 | 84.7059 | 13 | 2 | 13 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.1026 | 13 | 0 | 14 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | map_l125_m1_e0 | * | 89.6552 | 86.6667 | 92.8571 | 95.3642 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | * | 86.6667 | 86.6667 | 86.6667 | 95.5752 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 86.6667 | 86.6667 | 86.6667 | 95.5752 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 92.8571 | 86.6667 | 100.0000 | 98.0994 | 13 | 2 | 13 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 48.1481 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 87.7358 | 13 | 0 | 13 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 59.4595 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3415 | 13 | 0 | 13 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.5000 | 13 | 0 | 13 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 58.0645 | 13 | 0 | 13 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 81.2500 | 81.2500 | 81.2500 | 96.9112 | 13 | 3 | 13 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.6667 | 13 | 0 | 13 | 0 | 0 | ||